Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1516 ATGTCGGGGAAAGATCCGGTTATTAAGCTCTTTGGCCGAAAGATTCCGTTGCCGGAATGTCAGATTCCGACCACCACATCTCAGATTCCGTCCAACTCTGCTCCCAAGGATGGTTGCAGTAGCTTAAAGAAAGCAGAAGCAGAAAACTGTGAAGGACTTGAAACTCCACCTGAGTTAAGAGACAGTAAAAAAGAGTCACAGTGGCAGAAAAATGAGGCCCCAAAAGAAAACCCCAACTCCAAGGCTGCGGAAGTGGAAGATAAGAAGAGCAGCAGCACAGAAGAAGATGATAAAATGATGAAGAAACCAGACAAGATTCAACAGTGTCCACGATGCAACAGCATGGACACAAAGTTCTGCTATTTCAACAACTACAACGTGAATCAACCTCGCCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGGAATGTTCCAGTAGGTGCTGGAAGACGGAGGAACAAGCAGCACCTAGCATCACAAACACAATACCACCGCCACATCATAGTATCCCCCGAAGGAATCCCAATTGCTCCCACCACACTCACTGACTCATCATCTCCCCACCAACACCAACTTTTCTCAACTCTTGAATCATCATCACCTGCTTTCAGGTCATCCCCAGATCATCATCACCACAATAGTACCACCACCACCCTATTGAAATTTGGTCCAGAATCAGCGGATTCAGTTCTTCATCTGGGAAGTAATATCATCAACTGTGGAGAAAATGGAGGAGAGGAGGCATCCTCCTTGTGTGGATCTTCTGTGACCAATGCTAGTAGTGCTCAGGGAAATGAGTTATCCAATTCCAATGAGCTTAATCCATCAAATGGTGTCCAATGTTATCCTGTTGTTCCTCCATGGATGTTTCCAGTGCAGTGGTATCCCTTGCAATTTGTGGCACCACCCTACTGGACAGGGGCAGTTTCAATTGGATCATCCAATGGATGTCTCTCACCTTCCTCTTCTACCACTAACAGTTGCTGCTCAGGCAATGCCTCACCAACACCAACACTACTTGGAAAACACTCTAGAGATGCAGTTTTCAGTACTGATGAAGATAAATCAGACAAGTGTGTTTTGGTTCCCAAGACACTTAGAATTTGA 1125 0.4551 MSGKDPVIKLFGRKIPLPECQIPTTTSQIPSNSAPKDGCSSLKKAEAENCEGLETPPELRDSKKESQWQKNEAPKENPNSKAAEVEDKKSSSTEEDDKMMKKPDKIQQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRNKQHLASQTQYHRHIIVSPEGIPIAPTTLTDSSSPHQHQLFSTLESSSPAFRSSPDHHHHNSTTTTLLKFGPESADSVLHLGSNIINCGENGGEEASSLCGSSVTNASSAQGNELSNSNELNPSNGVQCYPVVPPWMFPVQWYPLQFVAPPYWTGAVSIGSSNGCLSPSSSTTNSCCSGNASPTPTLLGKHSRDAVFSTDEDKSDKCVLVPKTLRI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1516 374 MobiDBLite consensus disorder prediction 1 104 - -
Sto8g1516 374 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Sto8g1516 374 PANTHER CYCLIC DOF FACTOR 3-LIKE 3 374 - -
Sto8g1516 374 PANTHER CYCLIC DOF FACTOR 2 3 374 IPR045174 GO:0003700|GO:0006355
Sto8g1516 374 MobiDBLite consensus disorder prediction 20 38 - -
Sto8g1516 374 MobiDBLite consensus disorder prediction 41 104 - -
Sto8g1516 374 MobiDBLite consensus disorder prediction 255 278 - -
Sto8g1516 374 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
Sto8g1516 374 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Sto8g1516 374 MobiDBLite consensus disorder prediction 201 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1516 Sto-Chr8 9643346 9645218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1516 5 374 C2C2-Dof Transcription Factor Family AT5G39660 35.294 5.51e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto8g1516 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1516 - - ccaj:109792807 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1516 8 9643346 9645218 Sto8g1516 8 9643346 9645218 ECH