Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1141 ATGTCCACCTGCTTTTCGCCTTTGTTCTATAGTTTCCTCGCAAAACAGCTGCACGCTCCAAAATCTTACTTGGGTGGGCTTCGGATCTCCACATCCGTCATGTCTTACCGTCCCAACTTCCAAGGCGGTCGCAGGGGCGGCGCTTCATCTTCCGGCCGAGGAGGAGGCGGCGGCGCTCGCCGTGGAGGTGGCCGTGGTGGTGGGCGCGGAGGTCAAAGGTGGTGGGACCCTGCGTGGCGAGCCGAGCGCCTGAGACAAATGCAGGCCGAGAAGGAAGTTCTCGATGAGAACGAGTGGTGGGATAAGATGGAGAAGATGAAAGGAGGTGGAGAGCAAGAGATGATCACTAAGCGTAGTTATAGTCGTGAAGACCAACAAACCCTAGCTGACATGGCTCATGAACTAGGGCTGTATTTCAAAGTTCCATTGCCTGATTATCGTGCAGATCTTGACGAACGCCATGGATCCACTCAGAAGGAGATTAGAATGTCCACAGACATTGAGAGGAGGGTAGGATCACTTTTGAATAACACACAGTCCGAGGGGACAGCACCAGTTAACACGCCTTCCACAAAAACCAATGAGAAGTATAAACAATCAATAACCACTACAAAACCTGTCTCTGATAAGCAGACTGATTCTTCCAAGGAGAAACTTTCTGTTGAACTCAAAGAAAGGCAGGAACAAATGCAGGCAAGCGATAGTTTGAAGGCAATGAAGTCATTTAGGGAAAAACTTCCTGCATTTAAAATGAAGTCCGAGTTTCTAAATGCTGTTCAAAAAAATCAGGTATTGGTAGTTTCAGGAGAGACGGGTTGTGGCAAAACGACACTGCTGCCACAATTCATTTTAGAAGAGGAGATATCATGTTTGCGTGGAGCTAATTGCAACATAATTTGCACTCAACCTCGCCGTATATCTGCAATTTCTGTTGCAGCTCGAATATCAGCTGAAAGGGGGGAGAGTCTTGGTGAAACAGTTGGTTACCAAATTCGCCTTGAATCAAAACGTTCTGCTGAAACACGCCTCTTGTTTTGCACCACTGGTGTGTTACTTCGTCGGCTGGTACAAGATCCAGAGTTAACTGGTATTAGTCATTTGCTGGTGGATGAAATCCATGAAAGGGGCATGAATGAagactttttaattataattttgcgTGACCTTCTGCCTCGCCGTCCAGATTTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCTAAATACTTTGCCAATGCCCCGACAATACACATACCGGGATTTACTTTCCCTGTGGCTGAGTTCTTCCTAGAAGATGTATTGGAGAGAACTCGATATAGCATCACGTCAGAATTTGACAATTTTGAGGGGAGTtcaaggagaagaagaaaacagCAAGATTCCAAGAAGGACCCTTTGACTGAATTGTTTGAGGCATGTATATTTGATCTACCATACAGTCTGCATGATGATATTGATATAGATAATCATTACAAAGGTTACAGTTTACATGCTAGAAAGTCTCTTGAAGCTTGGTCTGGTTTGAAGATTGATTTGGGTTTGGTTGAAGCTACAATTGAATATATTTGTCGAAACGAAGAAGAATATGATTTTGTTGTCATTGTAGCCTTTTATCCTGTAGAGGTGTTACAGTACTTTGACCATGTTAATCTACTAAAAATTGTGCTAGCTACAAATATTGCTGAGAGTAGCATCACAATAGATGACGTTGTATATGTCATAGACTGTGGAAAAGCAAAGGAGACTAGTTATGATGCTCTAAACAAGCTTGCCTGTCTGTTACCGTCGTGGATTTCAAAGGCTTCAGCTCATCAGAGACGAGGACGTGCTGGTCGTGTACTGCCTGGAGTTTGTTTTAGGTTGTATCCAAAAGTGATCCATGATGCAATGCTTCAGTATCAGTTACCTGAAATTCTCAGAACACCATTGCAAGAGCTGTGCCTGCATATCAAAAGTTTGCAGCTTGGAACTGTGGGGTCCTTTTTAGCAAAAGCACTTCAACCACCAGATCCTCTGGCTGTTGAGAATGctattgaacttttaaaaaCAATTGGGGCATTAGATGATAAGGAGGAGCTCACTCCCTTGGGTCGGCATCTTTGCACCATACCCTTGGACCCGAATATAGGGAAGATGCTTCTGATGGGTTCTATCTTTCAGTGCCTCAATCCTGCTTTGACTATTGCTGCTGCTCTTGCATATCGTGACCCATTTGTCTTGCCAATAAGCAGAAAAGAGGAAGCTGATGCAGCAAAGCGATCTTTTGCTGGTGATTCTTGCAGTGATCACATAGCCCTTCTGAAAGCTTTTGAAGAATGGAAGGATGCAAAACGTAGAGGGAAGGATCGGCAATTCTGTTGGGATAATTTTCTATCTTCGATGACCTTGCAGATGATAGATGATATGAGAATTCagtttcttaatttattatcagACATTGGATTTGTTGACAAGTCCAGGGGTGTTAATGCGTACAACCAGTACAGCCGTGATCTGGAGATGGTTTGTGCAATTCTATGTGCCGGGCTGTACCCTAATGTTGTACAGTGCAAAAGGAGAGGAAAACGGACAGCTTTCTACACTAAAGAAGTTGGGAAAGTTGATATCCATCCTGCATCTGTCAATGCAGGGATTCATCTCTTCCCTCTGCCCTACATGGTGTATAGTGAAAAGGTTAAAACGACCAGTATTTATATTAGAGACTCAACAAACATATCAGATTATGCTCTACTTCTGTTTGGTGGTAATCTCATCCCTAGTAAAAGCGGAGGAGAGGGCATTGAGATGCTTGGTGGTTACCTTCATTTCTCTGCTTCCAAAAGTGTCATTGACTTAATAACGAAATTGCGTGGGGAGCTTGACAAGCTTCTAAACAGGAAGATTGAGGATCCAGGATTGGACATTTCCGCAGAAGGAAAAGGAGTGGTTGTTGCTGCTATTGAGTTACTGCACAGTTGTCGAAGGTACTGGACCAAAGGAGGCTCCCTTCGCAATGTCCCTCTTGGTGGTGGCTCTCGCAAAACCAGACGCCCTTCTTCTACAACATACTCctccattaataataatatcaatatccctacttcttcttcttcttcttctactcaATCTCATATTCATCATGATATTGATCTTGCATTAGTTTATGCCAATTTCCTCAATCCAAACCCACACAATAAGCCACATGATGATGATCATTCTGTAGTGCGAGTACAACAAGATCAGTACTATTCCACTAGTGTGTCCAACTCCAACATATGCACACAATTAGTATGCCCAATCATCAGTACTAGTGTTAGTTTGCCTTTGTTGCCACAACATAATCATTACGAGGTGGCTGATAGTAATTACCAAACGTATTCGGGTGGGTTATTCAATTTCAACTACTGCATGCAGCAAGATAGGATGATTGAGCAATGTAGTAATAATGATAGTGATGATTATGGTTTCAATCTGCCAATACCACcaggtgaagaagaagaagaggcagCTTCGCATGATGATCCCATAATAATATCTCATGAGATATTGATGGTAAGCCATGGAATGCAAGCGCCGCCACCTCCACCACCTGTTCTTGGAACTCAACCTCATCATGGTGACGTTGCTCACTTCATAATGGCTGATTGGGACCCCTTCAATCATTATTCTTTTccaaacccttga 3675 0.4177 MSTCFSPLFYSFLAKQLHAPKSYLGGLRISTSVMSYRPNFQGGRRGGASSSGRGGGGGARRGGGRGGGRGGQRWWDPAWRAERLRQMQAEKEVLDENEWWDKMEKMKGGGEQEMITKRSYSREDQQTLADMAHELGLYFKVPLPDYRADLDERHGSTQKEIRMSTDIERRVGSLLNNTQSEGTAPVNTPSTKTNEKYKQSITTTKPVSDKQTDSSKEKLSVELKERQEQMQASDSLKAMKSFREKLPAFKMKSEFLNAVQKNQVLVVSGETGCGKTTLLPQFILEEEISCLRGANCNIICTQPRRISAISVAARISAERGESLGETVGYQIRLESKRSAETRLLFCTTGVLLRRLVQDPELTGISHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSATINADLFSKYFANAPTIHIPGFTFPVAEFFLEDVLERTRYSITSEFDNFEGSSRRRRKQQDSKKDPLTELFEACIFDLPYSLHDDIDIDNHYKGYSLHARKSLEAWSGLKIDLGLVEATIEYICRNEEEYDFVVIVAFYPVEVLQYFDHVNLLKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVLPGVCFRLYPKVIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDPLAVENAIELLKTIGALDDKEELTPLGRHLCTIPLDPNIGKMLLMGSIFQCLNPALTIAAALAYRDPFVLPISRKEEADAAKRSFAGDSCSDHIALLKAFEEWKDAKRRGKDRQFCWDNFLSSMTLQMIDDMRIQFLNLLSDIGFVDKSRGVNAYNQYSRDLEMVCAILCAGLYPNVVQCKRRGKRTAFYTKEVGKVDIHPASVNAGIHLFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGNLIPSKSGGEGIEMLGGYLHFSASKSVIDLITKLRGELDKLLNRKIEDPGLDISAEGKGVVVAAIELLHSCRRYWTKGGSLRNVPLGGGSRKTRRPSSTTYSSINNNINIPTSSSSSSTQSHIHHDIDLALVYANFLNPNPHNKPHDDDHSVVRVQQDQYYSTSVSNSNICTQLVCPIISTSVSLPLLPQHNHYEVADSNYQTYSGGLFNFNYCMQQDRMIEQCSNNDSDDYGFNLPIPPGEEEEEAASHDDPIIISHEILMVSHGMQAPPPPPPVLGTQPHHGDVAHFIMADWDPFNHYSFPNP 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1141 1224 Gene3D - 540 638 IPR027417 -
Sto8g1141 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 799 IPR027417 -
Sto8g1141 1224 PANTHER ATP-DEPENDENT RNA HELICASE 94 527 - -
Sto8g1141 1224 PANTHER ATP-DEPENDENT RNA HELICASE 555 988 - -
Sto8g1141 1224 MobiDBLite consensus disorder prediction 174 236 - -
Sto8g1141 1224 CDD DEXHc_RHA-like 262 422 - -
Sto8g1141 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 658 IPR001650 -
Sto8g1141 1224 MobiDBLite consensus disorder prediction 210 231 - -
Sto8g1141 1224 MobiDBLite consensus disorder prediction 174 209 - -
Sto8g1141 1224 Pfam Helicase associated domain (HA2) 681 769 IPR007502 GO:0004386
Sto8g1141 1224 Pfam Helicase conserved C-terminal domain 546 617 IPR001650 -
Sto8g1141 1224 SMART ultradead3 244 432 IPR014001 -
Sto8g1141 1224 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 840 921 IPR011709 -
Sto8g1141 1224 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 365 374 IPR002464 -
Sto8g1141 1224 SMART ha2_5 680 771 IPR007502 GO:0004386
Sto8g1141 1224 Gene3D - 193 424 IPR027417 -
Sto8g1141 1224 SMART helicmild6 521 618 IPR001650 -
Sto8g1141 1224 CDD SF2_C_RHA 513 626 - -
Sto8g1141 1224 Pfam Dof domain, zinc finger 988 1014 IPR003851 GO:0003677|GO:0006355
Sto8g1141 1224 Pfam DEAD/DEAH box helicase 253 408 IPR011545 GO:0003676|GO:0005524
Sto8g1141 1224 Gene3D - 660 764 - -
Sto8g1141 1224 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 94 527 - -
Sto8g1141 1224 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 555 988 - -
Sto8g1141 1224 MobiDBLite consensus disorder prediction 38 74 - -
Sto8g1141 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 256 423 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1141 Sto-Chr8 7243580 7254730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1141 990 1060 C2C2-Dof Transcription Factor Family AT3G52440 58.667 4.85e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto8g1141 DEAD 2.3e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1141 K14442 - gmx:100792823 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1141 8 7243580 7254730 Sto8g1141 8 7243580 7254730 ECH