Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0213 ATGGAGCTCGAGGAGAATGGGCTGAGAGAGGAAGACTTGGCGAGCGTTGACGGAGAGTTGACGGATCTCCGACTCAGAGAGCTTCACCTGTTTTCCGTCTTTGCCTTCGAGGAGCCTCCTTATAATATCATCCAGAACGGCCTTGTCCATCATTCCCTCCATTGTCATCGTCATCATCTTCTCCTTCAATCTCTACCACCTTGGCAGAAGATGAATAGTGGAAATTCGGAAATAGATGGAAATGGAAGGATTCTCATCGGAGGATGTCTCTGCACAAAACCAAGTGAAAGCTTCTGTTCAACGAAAAATCCGACAAAGTATTGCAGAAGAGGTGATGTTACTTCGGGCTGTAGTCGTTTTTCACCTTGGCTAGACAAATTGGAACATATGCATTTGCCTATAATGGACATGATTAATATTATTACATTTAACATGACCCTTGCTCTACTACAGTACCCAGGACTTGAACCAGTGTTAGATGATATACTTCCAAAGAAGTCCCCTCTTATAGTTGTTAAATGTCAGAACCATCTGAATCTGGTCCTAGTGAACAACGTGCCATTGTTTTTCAGTGTCCGCGATGGACCATACATGCCTACCTTGCGACTCCTCCATCAATATCCAAATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAAATTTGTCTTAGCGGGTGCTAACATAATGTGCCCTGGTCTCACATCTCCTGGAGGGGTTTTGGATGAGGAAGTGGAGGCAGAAACCCCTGTGGCAATCATGGCTGAAGGAAAGCAGCATGCTCTCGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATATGGAGCGGCTTGATTGAAGACGTTTCAATGGCTATGGCAAAGGGCATCGATCTTAAGGCTGGTGGTAAGAGCAAAAAGACCAAAAGGACAGCACCAAAGTCCAATGATATCTACCTCAAGCTCTTGGTCAAGCTTTATCGCTTCCTTGTTCGGAGAACTGGTAGTAACTTCAATGCTGTAATACTCAAGCGCTTGTTCATGAGCAAGGTTAACAAACCTCCACTTTCTCTGTCAAGGTTGATAAAGTTTATGAAGGGAAAGGATGGTAAGATTGCTGTGGTTGTGGGTACTGTTACTGATGACATAAGAGCTTATGAAGTTCCATCCTTGAAAGTTACAGCACTCAGGTTTACAGAGACAGCACGAGCACGAATAGAAAAGGCAGGTGGTGAGTGCTTGACATTTGATCAGCTTGCTCTTAGGGCACCTCTGGGACAGAACACGGTCCTTCTTAGGGGTCCAAAGAATGCTCGTGAAGCTGTGAAGCATTTTGGTCCTGCTCCTGGCGTGCCCCACAGCCACACCAAGCCTTATGTGCGATCTAAGGGAAGGAAGTTTGAGAGGGCTAGAGGACGAAGGAACAGcagaggatttaggCATGCCGTCAACGGTTTCGACTTTGGGGTTTCTTTAGGGGAAGGGAACACTGAGGCAGACATAGGCCTTGACTCTGTCAGGACGAAACATGCAGTGGTACCAGCCGATGATGGTGCACCAATCATGACCTACAAGAAACACCTGTTCAACGCCAATGGAGTCAAGAAGGGCAACAAGGTTTCCCACAATGTGAAAGCCGGTGTAAGTGGAGATGGAAGGAGGGACATCGGTGTTGCCGTAGCCTCAGAGGTTAGGGGAGACGGCGCGGTAGCCTCGGGCACTAAGAGACGCAATCTGGTGGCGCAATGA 1731 0.4633 MELEENGLREEDLASVDGELTDLRLRELHLFSVFAFEEPPYNIIQNGLVHHSLHCHRHHLLLQSLPPWQKMNSGNSEIDGNGRILIGGCLCTKPSESFCSTKNPTKYCRRGDVTSGCSRFSPWLDKLEHMHLPIMDMINIITFNMTLALLQYPGLEPVLDDILPKKSPLIVVKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDEEVEAETPVAIMAEGKQHALAIGFTKMSAKDIWSGLIEDVSMAMAKGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKFMKGKDGKIAVVVGTVTDDIRAYEVPSLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRHAVNGFDFGVSLGEGNTEADIGLDSVRTKHAVVPADDGAPIMTYKKHLFNANGVKKGNKVSHNVKAGVSGDGRRDIGVAVASEVRGDGAVASGTKRRNLVAQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0213 576 CDD MCT1_N 151 199 - -
Sto8g0213 576 SMART pua_5 212 288 IPR002478 GO:0003723
Sto8g0213 576 MobiDBLite consensus disorder prediction 452 469 - -
Sto8g0213 576 SUPERFAMILY PUA domain-like 212 277 IPR015947 -
Sto8g0213 576 Pfam Pre-PUA-like domain 151 208 IPR041366 -
Sto8g0213 576 SUPERFAMILY Ribosomal proteins L15p and L18e 308 427 IPR036227 -
Sto8g0213 576 TIGRFAM unchar_dom_2: uncharacterized domain 2 182 276 IPR004521 GO:0003723
Sto8g0213 576 MobiDBLite consensus disorder prediction 439 469 - -
Sto8g0213 576 Gene3D - 146 289 - -
Sto8g0213 576 PANTHER 60S RIBOSOMAL PROTEIN L18 290 474 IPR000039 GO:0003735|GO:0005840|GO:0006412
Sto8g0213 576 Gene3D - 290 475 - -
Sto8g0213 576 ProSiteProfiles PUA domain profile. 211 275 - -
Sto8g0213 576 Pfam PUA domain 213 275 IPR002478 GO:0003723
Sto8g0213 576 Pfam Ribosomal protein 60S L18 and 50S L18e 290 474 IPR021131 -
Sto8g0213 576 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 290 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0213 Sto-Chr8 1440363 1449808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0213 291 474 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 80.000 7.66e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0213 K02883 - gmx:100791657 345.895