Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2344 ATGGAAGGAGGGTTTGGTCAAAACTCAGTTCCTTCTTCTGGTTCTTTTGACAAGTCTGTGATTATGGATGTTAAACCTATGCGTACTTTGCTACCTGTGTTCCCAACATCATCTCAAGCTCCTTCTTCTGGCCAGTGTCCTTCTGGGTTTTCTCCTTTCTTCCCATTTGGTGGACCTCAAGGATCTCCGACACCAGGTGGTGCCATGCCAGCTCCATTACGGTCATTTAGAAGTCCACTAGGTTCTAAGTCTTCGAAACGCGGGAGCAGCTCGAGACCATCCCATAGGAAGAACAAGAAAACTTCGGAGTCAGAAATTGATTTAAGTTCTGTACTTGGTATTAGCCCTGCTCAACGAGAAGATGGTAGCCGGGAAGTGGTTAATTTTTTACTAATGATGTTTGATGCACTTCGAAGAAGGCTCTGCCAACTTGAGGATGCCAAGGAGATAATTACCGGGTTGACTAAGCGTCCGGATTTAAAAGCTGGCAACACTTTAATGAGCAAAGGCATTCGAACAAACATGACGAAGAGAATAGGTGTAGTTCCTGGGGTTGAGATTGGGgacattttctttttcagaATGGAATTGTGTATTGTGGGCTTACATGCTCAATCCATGGGTGGAATTGACTACATGACTATCAGGGGTGAGTTTGAGGAAGAACCTTTGGCTTTAAGCATTGTTTCATCAGGAGAATATGATGATAATGCAGATGATGAGAATGTTTTAATTTATAGTGGTCAGAGTGGGAACTTTGGCAAGAAAGAAAAGCTGGTGGCTGATCAGAAGCTTCAAAGGGGTAATCTTGCCTTGGATAGAAGTTCACGGCGACACAATGAGGTGAGAGTCATCCGGGGTGTGAAAGATGCTTTCAaccaaaattcaaaagtttATATCTATGATGGTCTGTACAAGATTCAAGATTCATGGATAGAAAAGGGGAAATCTGGTAGTGGTGTATTTAAGTACAAGTTGGTGAGAATGCCTGGACAGCTTAGTGCTTTTTCTGTTTGGAAATCAGTTCAGAAGTGGAAGACGGGTTTCCCTTCGAGGAATGGACTTATTCTTACAGATATCTCTTCTGGAGCTGAGAGTGTTCCTGTATCACTCGTCAATGATGTTGATCATGAGAGAGCACCTGCTGCTTTCACATATTTCCATTCCCTTAGATATCCGAAATCATTCATCTTAATGCGCCCTTCATATGGCTGCAACTGTACTAAAGCTTGTGTCCCTGGTGATTTGAATTGCTCTTGTATTCAGAGAAACGAAGGTGATTTTCCATATACTGGCCATGGCTTGCTAGTGAGTCGAAAGCCTTTAGTTCATGAATGTGGCCCCACATGTCATTGTTTTCCTAACTGCAAAAATCGAGCCTCCCAAACGGGTTTAAAGCATCACATGGAAGTATTCAAGACAAGGGATAGAGGATGGGGTCTTCGATCATTGGATCCTCTTCGTGCTGGTACTTTTATTTGTGAGTTTGCAGGAGAAGTCATTGACAAAGGCAAGTTCAATGAGAATGGGGGGATAGGATTTAAGGATGATTATGTTTTTGATACAACCCGTATTTATGATCCATTCAAGTGGAATTATGAGCCCAGGTTACTAGAAGAAGTGAGTTCAAATGACACTAGTGAGGATTATGATATCCCGTCTCCTATAATTATAAGTGCTAAGAATTTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTTTGGCAGCCAGTTGTGTATGAAGAAAACAATCAATCCTTCCTTCATATCGCTTTCTTCTCTCTCAGACACATTCCCCCAATGACAGAGCTGACATATGATTATGGGATAACCCGTTCTGATCATACTGAGGGTAGCAGCATGCCCAAAGGGAGAAAGAAATGTTTATGCGGATCGTCGAAATGCCGTGGTTCTTTTGGTTGA 1938 0.418 MEGGFGQNSVPSSGSFDKSVIMDVKPMRTLLPVFPTSSQAPSSGQCPSGFSPFFPFGGPQGSPTPGGAMPAPLRSFRSPLGSKSSKRGSSSRPSHRKNKKTSESEIDLSSVLGISPAQREDGSREVVNFLLMMFDALRRRLCQLEDAKEIITGLTKRPDLKAGNTLMSKGIRTNMTKRIGVVPGVEIGDIFFFRMELCIVGLHAQSMGGIDYMTIRGEFEEEPLALSIVSSGEYDDNADDENVLIYSGQSGNFGKKEKLVADQKLQRGNLALDRSSRRHNEVRVIRGVKDAFNQNSKVYIYDGLYKIQDSWIEKGKSGSGVFKYKLVRMPGQLSAFSVWKSVQKWKTGFPSRNGLILTDISSGAESVPVSLVNDVDHERAPAAFTYFHSLRYPKSFILMRPSYGCNCTKACVPGDLNCSCIQRNEGDFPYTGHGLLVSRKPLVHECGPTCHCFPNCKNRASQTGLKHHMEVFKTRDRGWGLRSLDPLRAGTFICEFAGEVIDKGKFNENGGIGFKDDYVFDTTRIYDPFKWNYEPRLLEEVSSNDTSEDYDIPSPIIISAKNFGNVARFMNHSCSPNVFWQPVVYEENNQSFLHIAFFSLRHIPPMTELTYDYGITRSDHTEGSSMPKGRKKCLCGSSKCRGSFG 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2344 645 Pfam SET domain 478 614 IPR001214 GO:0005515
Sto7g2344 645 Gene3D - 163 347 IPR036987 -
Sto7g2344 645 ProSiteProfiles Post-SET domain profile. 629 645 IPR003616 -
Sto7g2344 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 83 643 - -
Sto7g2344 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 63 - -
Sto7g2344 645 SUPERFAMILY SET domain 366 642 IPR046341 -
Sto7g2344 645 SMART G9a_1 175 332 IPR003105 -
Sto7g2344 645 Pfam Pre-SET motif 360 459 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto7g2344 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 83 643 - -
Sto7g2344 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 63 - -
Sto7g2344 645 SMART set_7 467 620 IPR001214 GO:0005515
Sto7g2344 645 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 645 IPR025794 GO:0016571
Sto7g2344 645 ProSiteProfiles SET domain profile. 467 614 IPR001214 GO:0005515
Sto7g2344 645 MobiDBLite consensus disorder prediction 35 106 - -
Sto7g2344 645 Pfam SAD/SRA domain 179 332 IPR003105 -
Sto7g2344 645 SMART preset_2 357 451 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto7g2344 645 MobiDBLite consensus disorder prediction 35 49 - -
Sto7g2344 645 SUPERFAMILY PUA domain-like 162 350 IPR015947 -
Sto7g2344 645 Gene3D SET domain 350 644 IPR046341 -
Sto7g2344 645 ProSiteProfiles YDG domain profile. 180 328 IPR003105 -
Sto7g2344 645 ProSiteProfiles Pre-SET domain profile. 403 464 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2344 Sto-Chr7 28978051 28980027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2344 1 645 Su(var)3-9 homologs AT1G73100 53.666 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto7g2344 SAD_SRA 1.3e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2344 7 28978051 28980027 Sto4g2424 4 25632757 25634700 CCT