Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0080 ATGGCTGCGGTTGCTGAGATTTCCGTTGATGCAGCAGCTGCCAACAAATTGGACTCAAAACCGAATCCCGAATCCGAATTCAATGTGCAGAAGCTCGTTGATATGTTCACAAAGTTGAATCCTTCCGCGAAGGAGTTTTTCCCATCATCGTATTTTCATCATGATCATCATTATCTGAGCTATAATCAGTTCTTTCCCAACAATTTTCTGGTCAGTAATAAGCCCTCAGATAATGACAATTACCCAAACAACCGAAGGagaaaaaataattacaatcaAGGAAGAAGGCTGAATGGAAGATTGCATAAGGCCCAGAGAGAAGACAGCATTAGAAGAACGGTATATGTTTCAGATATTGATCAGCATGTTACTGAGGAGCGGCTGGCTGCTTTATTTATCAGTTGTGGGCAGGTAATTGATTGCAGAATTTGTGGTGATCCACATTCAATCCTCCGTTTTGCATTTGTGGAGTTTGCAGATGAACATAGTGCAAGAGCAGCTCTAAACCTTGGTGGCACTGTGCTTGGTTACTACCCAGTCAGGGTCCTTCCTTCTAAAACTGCTATACTTCCCGTGAATCCAACATTCCTACCTAGGTCAGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGtacaaatattgataaaaagGTTTCTCAAACTGAAGTGaagaatttttttgaaaaaacttgTGGTGGCGAGGTTACACGCTTGAGGCTTTTAGGGGATCATGTGCATTCAACACGGATAGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATAACTGCACTGAGTTGTAGTGGGATGCTCGTGGGAACACAGCCTATCAGGGTAAGTCCTTCAAAGACACCCGTGAGGCCAAGGGTAACCCATCCGATATCGCGTTGA 897 0.4192 MAAVAEISVDAAAANKLDSKPNPESEFNVQKLVDMFTKLNPSAKEFFPSSYFHHDHHYLSYNQFFPNNFLVSNKPSDNDNYPNNRRRKNNYNQGRRLNGRLHKAQREDSIRRTVYVSDIDQHVTEERLAALFISCGQVIDCRICGDPHSILRFAFVEFADEHSARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQTEVKNFFEKTCGGEVTRLRLLGDHVHSTRIAFVEFAMAESAITALSCSGMLVGTQPIRVSPSKTPVRPRVTHPISR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0080 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 296 - -
Sto7g0080 298 CDD RRM1_CID8_like 110 189 IPR034823 -
Sto7g0080 298 SUPERFAMILY RNA-binding domain, RBD 89 188 IPR035979 GO:0003676
Sto7g0080 298 MobiDBLite consensus disorder prediction 75 100 - -
Sto7g0080 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Sto7g0080 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Sto7g0080 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Sto7g0080 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Sto7g0080 298 SUPERFAMILY RNA-binding domain, RBD 199 291 IPR035979 GO:0003676
Sto7g0080 298 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 296 - -
Sto7g0080 298 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Sto7g0080 298 SMART rrm1_1 113 183 IPR000504 GO:0003723
Sto7g0080 298 SMART rrm1_1 210 282 IPR000504 GO:0003723
Sto7g0080 298 Gene3D - 197 291 IPR012677 -
Sto7g0080 298 Gene3D - 71 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0080 Sto-Chr7 628853 633138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0080 109 282 Eukaryotic Initiation Factors Gene Family AT1G34140 25.281 1.77e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0080 7 628853 633138 Sto7g0080 7 628853 633138 ECH