Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0041 ATGGCAACTCTGCTGAATACGGCCTGTCCACCTGCAAACCTATCATCAAAATCAAAAGGAAAGGGTTGTTGTAGCTTATATTCACAGATTCTAAACATCCCTAGGGTTTCCTTCAACAAGGGTTTTTCGAGAGTTTTGGCTTCTTCCCAGACCACTATTTCTCCAAAAGATGCTGCTTTTACTCTGCCCAACTGGAGGGCTGGGAAGAATGACCCAAAGAGTAAGGAGCTCAGGCTTAATGATGCATTCCTTTATTTAGAGTATATGGTGGGCAAAGGTCACAAGCCTGATGTAGCTCAAGCAACTCAGCTCTTGTATGACCTTTGCAAGTACAATAAATTGAGGAAAGCTGCTAGAGTGATGGAGATGATGGTGGGTTCGGGTATTATACCTTATGCAGCATCCTGTACATACTTGGTCAATCATTTGTGCAAGAAAGGGAATGTTGggtatgcaatgcaattggtTGAAAAGATGGAGGAACATCGGTTTCCAGTTAATACTATTACCTATAACACTCTAGTTAAAGGGCTTTGCATGCAGGGAAATTTAAACAAGAGCTTGCAGCTTTTAGATAAATTAACAAAGAAGGGGTTGGTACCCAATGCATTCACATATTCTTTCTTGCTTGAAGCTGCTTACAAGGAGAGGGGAGTAGATGAAGCCATGAAGCTTTTGGATGACATCATTGCCAAGGGCGGGGAGCGTAATTTAATTAGTTACAATGTTTTGTTAACTGGGTTGTGCAAGGAAGGTAGAACTGAAGAAGCTTTTAAACTTTTCAGAGAATTGCCTGCAAAGGGGTTTGATCCTAGTGTTGTGAGTTATAACATTTTGCTGAGGAATTTGTGCTACGAAGGGCGGTGGGATGAGGCAAATGCTCTATTAGCAGAGATGTATGAAGAGGATCAGTCTCCCTCTGTAGTTACCTACAACATATTAATTACTTCTCTTTCCCTCCATGGAAGAACAGACCATGCTTTCAAGGTTTTGGATGAAATGACAAGGAGTGGCTTCAAGGCAACAGCAACTAGCTATAATCCAATTATTGCTCGTCTCTGCAAGGAAGGGAAGGTGGATCTGGTAGTTCAGTGTCTAGATCAAATGATTTATCGGCACTGTAGTCCCAATGAAGGAACATATAATGCTATTGCTATGCTTTGTGAGGAAGGGAAAGTGCAAGAGTCATTCTCCATAATCCAAAGCTTGGGTACTAAACAAAACTCCCCCTTGCATGATTTCTACAAAAGTGTGATTTGGAGCATGTGCAAGAAAGGGAACACGTATCCAGCCTTTCAGCTATTATATGAAATGACAAAGTATGGATTTACACCTGATTCTTATACTTATTCAGCGTTGATAAGAGGAATGTGTAGGGAAGGAATGTTGGATGGGGCTATTGAGATATTCAGGGTTTTGGAACAAAATGGCTACAAGCCTGATACTGATAACTATAATGCACTTATACTTGGATTCTGCAAATCCCTAAGAACAGACTTGTCAATGGAGATATATGAGACGATGATTGATAAAGGATGCATGCCTAATGAGACAACTTATACTATTCTGATTGAAGGGCTTGTTTTTATAAAAGAGATGGATATGGCTGCCAAGCTCTTAAAAGAGTTATATTTAAAGGAGGTTCTGAGCCAAGGTACTGTGGAGAGACTTGTTATGCAGTATGACCTGGAGGATTTAGAAATGTAG 1707 0.4013 MATLLNTACPPANLSSKSKGKGCCSLYSQILNIPRVSFNKGFSRVLASSQTTISPKDAAFTLPNWRAGKNDPKSKELRLNDAFLYLEYMVGKGHKPDVAQATQLLYDLCKYNKLRKAARVMEMMVGSGIIPYAASCTYLVNHLCKKGNVGYAMQLVEKMEEHRFPVNTITYNTLVKGLCMQGNLNKSLQLLDKLTKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGERNLISYNVLLTGLCKEGRTEEAFKLFRELPAKGFDPSVVSYNILLRNLCYEGRWDEANALLAEMYEEDQSPSVVTYNILITSLSLHGRTDHAFKVLDEMTRSGFKATATSYNPIIARLCKEGKVDLVVQCLDQMIYRHCSPNEGTYNAIAMLCEEGKVQESFSIIQSLGTKQNSPLHDFYKSVIWSMCKKGNTYPAFQLLYEMTKYGFTPDSYTYSALIRGMCREGMLDGAIEIFRVLEQNGYKPDTDNYNALILGFCKSLRTDLSMEIYETMIDKGCMPNETTYTILIEGLVFIKEMDMAAKLLKELYLKEVLSQGTVERLVMQYDLEDLEM 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Sto7g0041 568 Gene3D Tetratricopeptide repeat domain 285 402 IPR011990 GO:0005515
Sto7g0041 568 Gene3D Tetratricopeptide repeat domain 183 284 IPR011990 GO:0005515
Sto7g0041 568 Gene3D Tetratricopeptide repeat domain 73 182 IPR011990 GO:0005515
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 485 517 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 135 167 IPR002885 -
Sto7g0041 568 TIGRFAM PPR: pentatricopeptide repeat domain 448 482 IPR002885 -
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Sto7g0041 568 Pfam PPR repeat family 344 384 IPR002885 -
Sto7g0041 568 Pfam PPR repeat family 237 284 IPR002885 -
Sto7g0041 568 Pfam PPR repeat family 480 527 IPR002885 -
Sto7g0041 568 Pfam PPR repeat family 167 212 IPR002885 -
Sto7g0041 568 Pfam PPR repeat family 415 459 IPR002885 -
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Sto7g0041 568 Pfam PPR repeat 305 335 IPR002885 -
Sto7g0041 568 Pfam PPR repeat 135 163 IPR002885 -
Sto7g0041 568 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 567 - -
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Sto7g0041 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 567 - -
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Sto7g0041 568 SUPERFAMILY HCP-like 82 278 - -
Sto7g0041 568 Gene3D Tetratricopeptide repeat domain 403 473 IPR011990 GO:0005515
Sto7g0041 568 Gene3D Tetratricopeptide repeat domain 474 546 IPR011990 GO:0005515
Sto7g0041 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0041 Sto-Chr7 396587 398293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0041 97 566 Glycosyltransferase AT1G05670 24.416 3.57e-48 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0041 7 396587 398293 Sto7g0041 7 396587 398293 ECH