Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0031 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCACCGTCAGGTTCCATTTCGGGCTCGTCCTCTCGCTCTAGGTCCTCCTCTCCCTCCGATTCCCGCTCTTCCTCTCGCTCCCGCTCTCCCTCCCGCTCCAGATCCTTCTCTTCGTCCTCTTCCCCGTCCCGCAGTCTCAGCTCCCGAAGCCGAAGCCCCCCTCCTCAGAGGAGAAAAAGTCCTGCTGAAGCAGCTAAGCGAGGCAGATCTCCTCCATCCCAATCTAGAAGGACTTCTCCACCCCCAAGAAAACCTTCTCCTGTCCGTGAGTCACTTGTTCTTCACATAGACAAACTCAGCAGGAATGTCAATGAGGGCCATTTGAAAGAAATATTCAGTAATTTCGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTAGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTGCTATACATGGACGGTGCCCAAATAGATGGAAACATTGTTAAGGCAAGATTTACCCTACCTCCAAGACAGAAGGTTTCGCCACCCCCAAAGGCTGCTGCTGTTGCTCCAAAAAGAGATGCTCCTAGGACTGATAATGCTAGTGCAGATGTCGAAAAGGATGGTCCAAAGCGTCAAAGAGAATCTTCTCCTCGAAGAAGACCTCCTTCGCCACGAAGGAGATCTCCTATGCCTCGAAGAGTTGGGTCTCCAAGACGATTAGATTCTCCTGTTCGTCGTCGTTTGGACTCTCCTCCTTACCGTCGGGGAGACACACCTCCTAGGAGGAGGCCTGTCTCTCCTGCAAGAGGTCGTTCTCCGTCTCCGCCAAGGCGCCTAAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGTCCCGCTCGTCGTcgttctcctcctcctccaagGCGCCGTTCGCCACCTAGACGAGCTCGCAGTCCTCCTAGAAGGTCTCCAATAAGTCGCAGACGTAGTCGCTCTCCAATACGCAGAGGTCGACCACCCGTAAGACGTGGAAGGTCATCATCATACTCTGATTCACCAAGTCCACGCAAGGTATCCCGGCGTTCAAGGAGTCGCAGTCCAAGGAGGCCGATGAGAGGAAGAGGCAGTAGCAAGAGCAGCAGCAGCAGTTCACCACCGCCAGCTCGCAAACCATAG 1182 0.5262 MAKPGRGRRSPPSGSISGSSSRSRSSSPSDSRSSSRSRSPSRSRSFSSSSSPSRSLSSRSRSPPPQRRKSPAEAAKRGRSPPSQSRRTSPPPRKPSPVRESLVLHIDKLSRNVNEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPPKAAAVAPKRDAPRTDNASADVEKDGPKRQRESSPRRRPPSPRRRSPMPRRVGSPRRLDSPVRRRLDSPPYRRGDTPPRRRPVSPARGRSPSPPRRLRSPARVSPRRMRGSPARRRSPPPPRRRSPPRRARSPPRRSPISRRRSRSPIRRGRPPVRRGRSSSYSDSPSPRKVSRRSRSRSPRRPMRGRGSSKSSSSSSPPPARKP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0031 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Sto7g0031 393 MobiDBLite consensus disorder prediction 12 65 - -
Sto7g0031 393 MobiDBLite consensus disorder prediction 179 393 - -
Sto7g0031 393 SMART rrm1_1 103 176 IPR000504 GO:0003723
Sto7g0031 393 PANTHER BNAA09G56240D PROTEIN 1 383 - -
Sto7g0031 393 MobiDBLite consensus disorder prediction 375 393 - -
Sto7g0031 393 CDD RRM_RNPS1 104 176 IPR034201 -
Sto7g0031 393 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 383 - -
Sto7g0031 393 MobiDBLite consensus disorder prediction 1 100 - -
Sto7g0031 393 SUPERFAMILY RNA-binding domain, RBD 88 187 IPR035979 GO:0003676
Sto7g0031 393 Gene3D - 13 186 IPR012677 -
Sto7g0031 393 MobiDBLite consensus disorder prediction 202 227 - -
Sto7g0031 393 MobiDBLite consensus disorder prediction 288 344 - -
Sto7g0031 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 172 IPR000504 GO:0003723
Sto7g0031 393 MobiDBLite consensus disorder prediction 244 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0031 Sto-Chr7 325967 331022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0031 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 1.74e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0031 7 325967 331022 Sto7g0031 7 325967 331022 ECH