Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4307 ATGGACCAAATGTACGGAGCTCCGTCCTCCACGCCTGACTACTCCGACAAGGTTTTGATGACGCCGGACAATCTGATCTTTCCTCCCGACTACCAGACCTACCTCATGTCTTCCTCCGCCGCGCCCTTCCGTGATCGGATTCCCATGTTCGGATCCGACGACTTGCTCTCCGCTGCCTCCGCGATTACCGAACCCGAAGCCTCCGTCGTCGCTGCTCCCGATTTCCGCCTCCAACAGGACTCCTCCTCCGCCATCAAAGCTAGAATCGCATCTCATCCTCAATATCCTCGTCTCCTTCAAGCTTACATCGATTGCCAGAAGACACAGGTAGGAGCGCCCCCGGAAATAGCGTGTTTGTTAGACGAAATCCGGCGAGAAAACGACCTTAGTAAGAAGGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAATTCATGGAAAGCTATTGCGACATGCTGTTGAAGTATAAATCTGATCTTGAGCGGCCTTTTGATGAAGCAACCTCCTTCCTCAACAAGATCGAAATGCAGCTCACCCATCTCTGCACTGGTGCTTCAGCTCTAAGCCTTTCCGAAGATGGGGTTGTGTCTTCCGAAGAAGATTTGAGTGCCGGAGATGGAGATACTCAAGATGGTCAAGCGAGGGGTGAAGACCGAGAACTTAAGGACATGCTCTTACGGAAGTTTGGGAGTCGCATTAGCACTTTGAAAATGGAGTtctcaaagaagaagaaaaagggtaAACTACCCAAAGAAGCCAGGCAATGTCTGCTTGAGTGGTGGACTGTTCACTCTAAATGGCCATACCCAACGGAAGCTGATAAGATTGCATTGGCTAAATCAACGGGTCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAACCATCCGAGAACATCAACATGCAGTTTTCTGCTATGGATAATCTGACTGGACGGTTCTTTTCTGATGAATGA 987 0.4863 MDQMYGAPSSTPDYSDKVLMTPDNLIFPPDYQTYLMSSSAAPFRDRIPMFGSDDLLSAASAITEPEASVVAAPDFRLQQDSSSAIKARIASHPQYPRLLQAYIDCQKTQVGAPPEIACLLDEIRRENDLSKKDVVSTCFGADPELDEFMESYCDMLLKYKSDLERPFDEATSFLNKIEMQLTHLCTGASALSLSEDGVVSSEEDLSAGDGDTQDGQARGEDRELKDMLLRKFGSRISTLKMEFSKKKKKGKLPKEARQCLLEWWTVHSKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENINMQFSAMDNLTGRFFSDE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4307 328 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 318 - -
Sto6g4307 328 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Sto6g4307 328 Pfam ELK domain 223 244 IPR005539 GO:0003677
Sto6g4307 328 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Sto6g4307 328 Pfam KNOX1 domain 84 128 IPR005540 GO:0003677|GO:0005634
Sto6g4307 328 SMART KNOX1_2 83 129 IPR005540 GO:0003677|GO:0005634
Sto6g4307 328 Gene3D - 241 316 - -
Sto6g4307 328 CDD homeodomain 269 307 IPR001356 GO:0003677
Sto6g4307 328 SMART ELK_2 223 244 IPR005539 GO:0003677
Sto6g4307 328 SMART HOX_1 245 310 IPR001356 GO:0003677
Sto6g4307 328 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Sto6g4307 328 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Sto6g4307 328 SUPERFAMILY Homeodomain-like 244 314 IPR009057 -
Sto6g4307 328 Pfam KNOX2 domain 139 185 IPR005541 GO:0003677|GO:0005634
Sto6g4307 328 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 318 - -
Sto6g4307 328 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4307 Sto-Chr6 45829294 45838014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4307 1 328 Homeobox Transcription Factor Family AT1G23380 66.667 2.44e-149 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto6g4307 KNOX2 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4307 - - gmx:100803730 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4307 6 45829294 45838014 Sto6g4307 6 45829294 45838014 ECH
Sto6g4307 6 45829294 45838014 Sto11g1144 11 11418603 11424131 PCT