Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3735 ATGGGTGAACAGAAGATAAACAGTTATAATTCGAGTGACCCATCAATTCGATGTGTGAGATTTTATACCAAAGTGGATATCAAAGTTAATAGTACGAAAGCACCACGATTACAGCGCGTACTGATTGGACGCTATGCTATCTTATCTGATCTATCTATATACAGACATCAAACGTTAAACAAGATGATCCAGGAGCTGTTGGGTGGTTCTGCCCTCATACCAGGCGATACCAAAATCTCCGGAGCATCACCTGCAGGAGTAGTGCTTTCCCCAATCACCACCACCactccttcttcttccaccaccgccgccgcaAACTCCGACAACCAAAATCTGAGGTGTCCCCGATGTGATTCCTCCAACACCAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGTTACTGGACCAAAGGCGGCGCTCTACGCAACATCCCCATCGGAGGCGGCTGCCGCAAGAACAGGAACGTCGGCAGCGTGTCCAACTCGGTGGCCGCCAAGACGGCCGGCATGGGGAAGGTGAGAAGCACAGTTGCAGCAGCAGCATGTGAGCTGGAAAGGCCATCAATGGTTggggtgggtggtggtgggttCGTGGACCACTTGGACCTTCCGTCCTCCAGCCCAATCCTATGGGGTTCCCCGCAAAATTCGCCTATACTAGCCCTTCTCAGAGCTACCCATAAtaatcaaaaccctaaccctaatcctagTCCCATGACGTCCGTGAAGGAAGAAGGGAGCTTGGTTCCAGCGGGGTCCCACACGATGATCACTACTGAGGCAATGGTGAATGGTCGAGGAGGCGctctaggtctagggtttgaatTTGATTGTGTTAGTGGCCAATTTCCTACACTTGGGCTGTGTAGTAGTAGTTCTTTTTGGAGGAATAATTATATCATTaacaataatactaataatgaaGATCTTGGGCTTTTACTTGGGCAACATCATCAGAGCAGTACTAATACTACTACTACtagtgggagtgggagtgggatTCAAGAACTGTACCAGAGACTGAGGTCATCATCAGTTAATTATTGTGGCGATAATATTAACTCATCGCAAGTGTTTCTGGGAAGCATGCCTTcttctaattcttcttctttgtccAATATGTTGGAGTCATCAGCTTCTGTAGTTGCTGGGGATGATCAATTGGGGTACACCTGGAATCCAACATTTTCTTGGTCTGATCTTCCCACCACCAATGGTACAGCATATCCTTAA 1266 0.4186 MGEQKINSYNSSDPSIRCVRFYTKVDIKVNSTKAPRLQRVLIGRYAILSDLSIYRHQTLNKMIQELLGGSALIPGDTKISGASPAGVVLSPITTTTPSSSTTAAANSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNIPIGGGCRKNRNVGSVSNSVAAKTAGMGKVRSTVAAAACELERPSMVGVGGGGFVDHLDLPSSSPILWGSPQNSPILALLRATHNNQNPNPNPSPMTSVKEEGSLVPAGSHTMITTEAMVNGRGGALGLGFEFDCVSGQFPTLGLCSSSSFWRNNYIINNNTNNEDLGLLLGQHHQSSTNTTTTSGSGSGIQELYQRLRSSSVNYCGDNINSSQVFLGSMPSSNSSSLSNMLESSASVVAGDDQLGYTWNPTFSWSDLPTTNGTAYP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3735 421 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 81 418 IPR045174 GO:0003700|GO:0006355
Sto6g3735 421 PANTHER F-BOX FAMILY PROTEIN 81 418 - -
Sto6g3735 421 Pfam Dof domain, zinc finger 110 166 IPR003851 GO:0003677|GO:0006355
Sto6g3735 421 ProSitePatterns Zinc finger Dof-type signature. 114 150 IPR003851 GO:0003677|GO:0006355
Sto6g3735 421 ProSiteProfiles Zinc finger Dof-type profile. 112 166 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3735 Sto-Chr6 42235936 42239570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3735 112 221 C2C2-Dof Transcription Factor Family AT5G60200 55.455 6.27e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto6g3735 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3735 - - gmx:100800420 292.352