Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2918 ATGGGTAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGGCAAGTCACATTTGCGAAGAGGAGGAATGGGCTTCTGAAGAAGGCTTACGAGCTCTCCGTCCTCTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTCTATGAGTTCTGCAGCACATCTAGCATGGCCAAGACAATCGAACGGTACCAAAGATGCAGTTACGGATCCTTGGAAGCAGACCAACCAGCAGTGGAGACACagAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCATTACAACGTACACAGAGAAATCTGCTTGGGGAAGAATTGGAACACTTGGGCATAAAGGAGCTTGAGCAGCTTGAACGTCAGTTGGACTCTTCATTAAAGCAAATCAGATCAAACAAGACTCAACATATGCTTGATCAACTCGCTGATTTGCAGAGGAAGGAAGAGATGCTTCTGGAAACTAATAAAGCCTTGAGGAGCAAGATGGAGGAAATAACAATAGGCCTTCAACCATCATGGGAAGCTAGGGAGGAACATGATCCATACAGCCGCCACCCTCCACATTCTGAAGGATTCTTTGAGATACCACATTGCAATAGTACATTGCAGATTGGGTATGGTTCTGCAGTGGCAAATGAAGGTGGAGCAGCTGTAGGAACCTCAGCCCAAAATGCTACTGAATTCATGCCAGGATGGATGGCATGA 732 0.4672 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSMAKTIERYQRCSYGSLEADQPAVETQRCYQEYLKLKSKVEALQRTQRNLLGEELEHLGIKELEQLERQLDSSLKQIRSNKTQHMLDQLADLQRKEEMLLETNKALRSKMEEITIGLQPSWEAREEHDPYSRHPPHSEGFFEIPHCNSTLQIGYGSAVANEGGAAVGTSAQNATEFMPGWMA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2918 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sto6g2918 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 223 - -
Sto6g2918 243 PANTHER MADS BOX PROTEIN 1 223 - -
Sto6g2918 243 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g2918 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto6g2918 243 Coils Coil 121 144 - -
Sto6g2918 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g2918 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Sto6g2918 243 Coils Coil 150 173 - -
Sto6g2918 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2918 Sto-Chr6 36405207 36414639 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto6g2918 K-box 1.2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2918 6 36405207 36414639 Sto6g2918 6 36405207 36414639 ECH
Sto6g2918 6 36405207 36414639 Sto13g1880 13 26271750 26275448 ECH