Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2834 ATGATGCAGCAGCAGCAAAACGGCGACGTTTTTGACAACAACAATCTTCCAAACATCCACCCGCCACCGTGGTCTCTCCCTCCGGTTCACTCCTTCAACCCGCCCCGGGTCGAACCGGACCACTTTTTGGTCCCTTCTTCTCCTTACGCGGCTCTCTTCAACCGGAGGGGGGTTCCTTCTCTACAGTTCGCTGCTTACGATGGTCCCTCCACTTCGGATCACCATCTCCGGATCATATCCGACACTCttggagtcggagtcggatccCAGGTGGCTCATCAACCCGGCGGCTTCCAAGCCGAGCTGGGGAAGATGACGGCTCAGGAGATCATGGACGCCAAGGCCCTCGCGGCTTCCAAGAGCCACAGCGAAGCCGAGAGACGACGCCGAGAAAGAATCAATAACCATCTCGCCAAGCTCCGAAGCCTATTGCCCAACACAACCAAAACAGACAAAGCTTCACTACTAGCAGAAGTGATACAACACGTGAAGGAGCTGAAGCGTCAGACGTCCATAATCGCGGAGACGAGCGCGGTGCCGACGGAGGCGGACGAGCTCACGGTGGACGAGGCGGCGGACGAGGACGGGCGGGTCGTGATAAAGGCGTCGCTGTGCTGCGAGGACCGGTCGGATCTGTTGCCGGATCTGATAAAGACGCTGAAAGATCTGAGGCTGAGGACGGTGAAGGCGGAGATCACGACGCTGGGAGGGCGCGTGAAGAACGTGTTGTTCATTActagggaagaagaagaagaagaagatgaagaagatgatgatgaagaagaagaaggttgtAGTAATATTAGTAGTGAAGAGCAGAAGAAGGAGTATTGCATTAGGTCAATACAAGAGGCACTCAAGGCAGTGATGGAGAagaatggtggtggtggtggggacgaTTCTGGGAGTgtgaggAAGTATGGATGCTTCGTCGAATCTAGAGTCAATACAATGCAGACTTAA 963 0.4881 MMQQQQNGDVFDNNNLPNIHPPPWSLPPVHSFNPPRVEPDHFLVPSSPYAALFNRRGVPSLQFAAYDGPSTSDHHLRIISDTLGVGVGSQVAHQPGGFQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSIIAETSAVPTEADELTVDEAADEDGRVVIKASLCCEDRSDLLPDLIKTLKDLRLRTVKAEITTLGGRVKNVLFITREEEEEEDEEDDDEEEEGCSNISSEEQKKEYCIRSIQEALKAVMEKNGGGGGDDSGSVRKYGCFVESRVNTMQT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2834 320 MobiDBLite consensus disorder prediction 248 266 - -
Sto6g2834 320 PANTHER TRANSCRIPTION FACTOR BHLH30 34 305 IPR045847 GO:0003700|GO:0006355
Sto6g2834 320 PANTHER TRANSCRIPTION FACTOR BHLH30 34 305 - -
Sto6g2834 320 Pfam Helix-loop-helix DNA-binding domain 120 166 IPR011598 GO:0046983
Sto6g2834 320 CDD bHLH_AtAIG1_like 112 189 - -
Sto6g2834 320 SMART finulus 123 172 IPR011598 GO:0046983
Sto6g2834 320 Gene3D - 112 173 IPR036638 GO:0046983
Sto6g2834 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 173 IPR036638 GO:0046983
Sto6g2834 320 MobiDBLite consensus disorder prediction 247 272 - -
Sto6g2834 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2834 Sto-Chr6 35572689 35576193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2834 22 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 59.933 3.72e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g2834 HLH 2.1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2834 6 35572689 35576193 Sto6g2834 6 35572689 35576193 ECH