Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2833 ATGCCGGTTCGGAGGAGGGTGATGAGCTGGAGAAGGGTGGGAAAGTCTCTGCAAGCTCTTGTAGCGCATGGCTTGCTCTTCGCCTTCACGCTTCTTCTTGTTCTTAAGCTTGACCATGTCGTTCATTATTCATGGTgGACCATATTTTCACCTCTGTGGATTTTTCATGCTGTTGTAGCACGAGGCAGATTTTCTTTGCCGGCTCCTTCTATGCCTCATGATCGCCATTGGGCTCCATGTCATGCCATCGTAGCGACACCTTTACTTGTTGCTTTTGAGCTACTTCTTTGTATACATCTAGAGATCAGTTATGTTGTAAATTTAAAGGTCGTCTTCTTGCCCCTACTAGCTTTCGAAGTGGCAATTTTGATTGATAACATTAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATATGAGCGATGAAGCGATATGGGAAACCCTTCCTCACTTCTGGGTTGCAATATCAATGGTCTTCTTTATTGCTGCTACAATATTTACTCTTCTAAAGATATGCGACAAACACTGCTTCATTGTTCTCTggcaaattttctttcaatcacTTGCAGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTGTTTATAAACTTAGGAATTGCGGAGTGCTTTGCCTTTCTAGTTTGTACAAAGTGGTACAATCCATCAATTCATGGAAAAtgtcacattgacatgacagaTCCAAGTTCGTCAACATTTTCATCATCATTTACTATAAGATACCTGGACTGGGACAGAGGCTTGGTGGTTCCCGCAGATGAAGATAGGCAGCAAAGTGGGTTCTGTAGTCTGCAGGACATTGGTGGGCATATTATGAAGATTCCATTCATTGGTTTCCAAATTCTGCTGTTTATGCATTTAGAGGGAACACCACCCAGTGCCAAAACTATATCATGCGCAGTTGTTTTTTCTCCCCTTTTCTTGCTACAAGGTGCTGGGGTTTTATTTGCGGCTTATAGACTAGTGGAGAAATTAGTTCTTCTAGTTTACAGTGGAGATGTTCCTGGAAGATACTCAGATATAGCATTAAAATTCCGTGATTGTTTTGGTTTCTTGCATCATGGGTCAAGGTTGTTGGGTTGGTGGTCAATAGATGAACGTAGTCGAGAGGAACAAGCTAGACTTTATTGTGCTGGGAGTTCAGGGTATAATACTTTTTCTGCTGATATGGTGAATAAAATGCCCAAGGCAGATCTTGTTGAGGAGATTTGGAAACTACAAGCTGCACTAGGTGAGCAGTCAGAGATTACAAAATACAGCCAGGAGGAGTATGAAAGACTCCAAAATGAAAAGATCCTATGCAGAGTTTGTTTTGAGGAGCAGATCAATGTGGTCCTGCTCCCATGCAGGCATCACATTCTTTGCAGTATATGTGGAGAAAAGTGCAAGAGGTGCCCTATCTGCCGTGTCTCCATAGAAGATCGAATGCCTATATATGATGTATAG 1470 0.4143 MPVRRRVMSWRRVGKSLQALVAHGLLFAFTLLLVLKLDHVVHYSWWTIFSPLWIFHAVVARGRFSLPAPSMPHDRHWAPCHAIVATPLLVAFELLLCIHLEISYVVNLKVVFLPLLAFEVAILIDNIRMCRALMPGDDENMSDEAIWETLPHFWVAISMVFFIAATIFTLLKICDKHCFIVLWQIFFQSLAGDVAALGWWDLFINLGIAECFAFLVCTKWYNPSIHGKCHIDMTDPSSSTFSSSFTIRYLDWDRGLVVPADEDRQQSGFCSLQDIGGHIMKIPFIGFQILLFMHLEGTPPSAKTISCAVVFSPLFLLQGAGVLFAAYRLVEKLVLLVYSGDVPGRYSDIALKFRDCFGFLHHGSRLLGWWSIDERSREEQARLYCAGSSGYNTFSADMVNKMPKADLVEEIWKLQAALGEQSEITKYSQEEYERLQNEKILCRVCFEEQINVVLLPCRHHILCSICGEKCKRCPICRVSIEDRMPIYDV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2833 489 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 489 - -
Sto6g2833 489 Pfam Zinc finger, C3HC4 type (RING finger) 440 482 - -
Sto6g2833 489 ProSiteProfiles Zinc finger RING-type profile. 442 477 IPR001841 -
Sto6g2833 489 Pfam Transmembrane Fragile-X-F protein 35 317 IPR019396 -
Sto6g2833 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 488 IPR013083 -
Sto6g2833 489 SUPERFAMILY RING/U-box 433 484 - -
Sto6g2833 489 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2833 Sto-Chr6 35550597 35559936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2833 8 489 C3H Transcription Factor Family AT1G73950 62.857 0.0 605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2833 6 35550597 35559936 Sto6g2833 6 35550597 35559936 ECH