Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2828 ATGAAACTCACATCGTTTAGTTGTTTTCTCAACTGGAAGATCATAAAtagaggaaaagaagaagaaaaggagtGTCTTTTGTACTCTTTCGGTAGCTATTTTGCTTCTGTGAAGGGGAAATATTCTGTTATTGTGCTTCGCTTGCCTTCATGGTTGGTTGACAAAAGTAGGATTGCCACCAAAATTAAGAGTGCATCTGGAGCATGCAATCCTGAAAGTGTCGTATGGAAAAGCAATCCTACAAGAGCTTGCCCAAACTGTCAACACGAGATTGATAATAGTGATGTAACACAAGAGTGGCCTGGATTACCAAAAGGTGTGAAATTTGATCCATCTGACCAAGAGATAATTTCGCACTTGCTTGCAAAAGTTGGTGCAGGAAATTCAAAACCTCATCCTTTCATCGATGAATTTATTACTACTCTTGAAGTGGAGGATGGAATCTGTTATACACATCCTCGATTTTTACCAGGTGTGAAGCAAGATGGAAGTGCTTCCCACTTCTTCCACAGAGCAATCAAGGCTTATAATACTGGCACCAGAAAGCGTCGAAAAATACTTGGTCAGGATTTTGGTGATGTTCGTTGGCACAAGACTGGAAGGACTAAGCCAGTAATGTTGGATGGGGTACAAAAAGGCTGTAAAAAGATTATGGTTCTCTATATGAGCATGGCTAAAGGAGGGAAGGCTGAGAAAACTAACTGGGTTATGCATCAATATAACCTGGGAACTGAAGAGGATGAAAAAGATGGGGAGTATATTATCTCTAAAGTATTTTACCAGCAGCAGCAGCAAGTCAGATTGGGTGATAAAAATGAACTGGATATTCCTGAAGCCACAGAAACCATAGAAGAAACAATTGTAAAAGTCGATCCAGTCACTCCCAAATCTGTCACCCCTGATCCTCCTCGTAATGAAAGGCGATGCATAGACCTTGACCTTGACCAAGAACAAGAATCATGTTTCATTCCTCAGAATCCTCAGATGGATTGTGTAGGATATGAAATTGAAGCTGATTGTGAAGAGCATGTGGAAACTGATCTATCAAAGGATGACACTATCCCTAATGAAGGTGCAGATAACAACGAAAATCGTGCTGATGAAGACTCGAAATGGTGGGATAGCGAGTCACAGAATATTTTGGATTCACAACAACTAGTTGAAGCTCTGTCTTTGGTTGATGATTTCCTTCAGAGCCAATCTCCCGACAGGGATGGGAAGAGTGGAGAACACAAGGAACGCCCCAGTCTTTCGGTTTATGCTCATCTGGGACCGGAGCATCTGAAGAAGGATCTGGAAGAGTGCCAAAATCTTGTCCTTGATCCTCCCAATTTTGAGCGTGATACACCTCCAGAATTTCGACTAAGTCAGCTGGAATTCAGTTCGCAGGATAGCTTTCTTGCATGGGGCGGAAGCATCAGGCAAGGCAATTAA 1434 0.4135 MKLTSFSCFLNWKIINRGKEEEKECLLYSFGSYFASVKGKYSVIVLRLPSWLVDKSRIATKIKSASGACNPESVVWKSNPTRACPNCQHEIDNSDVTQEWPGLPKGVKFDPSDQEIISHLLAKVGAGNSKPHPFIDEFITTLEVEDGICYTHPRFLPGVKQDGSASHFFHRAIKAYNTGTRKRRKILGQDFGDVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMAKGGKAEKTNWVMHQYNLGTEEDEKDGEYIISKVFYQQQQQVRLGDKNELDIPEATETIEETIVKVDPVTPKSVTPDPPRNERRCIDLDLDQEQESCFIPQNPQMDCVGYEIEADCEEHVETDLSKDDTIPNEGADNNENRADEDSKWWDSESQNILDSQQLVEALSLVDDFLQSQSPDRDGKSGEHKERPSLSVYAHLGPEHLKKDLEECQNLVLDPPNFERDTPPEFRLSQLEFSSQDSFLAWGGSIRQGN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2828 477 Pfam No apical meristem (NAM) protein 104 242 IPR003441 GO:0003677|GO:0006355
Sto6g2828 477 SUPERFAMILY NAC domain 88 261 IPR036093 GO:0003677|GO:0006355
Sto6g2828 477 MobiDBLite consensus disorder prediction 400 417 - -
Sto6g2828 477 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 49 470 - -
Sto6g2828 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 49 470 IPR044799 GO:0003700
Sto6g2828 477 MobiDBLite consensus disorder prediction 344 372 - -
Sto6g2828 477 Gene3D NAC domain 112 266 IPR036093 GO:0003677|GO:0006355
Sto6g2828 477 ProSiteProfiles NAC domain profile. 103 261 IPR003441 GO:0003677|GO:0006355
Sto6g2828 477 MobiDBLite consensus disorder prediction 398 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2828 Sto-Chr6 35514888 35518920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2828 59 263 NAC Transcription Factor Family AT1G28470 53.271 9.10e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto6g2828 NAM 5.2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2828 6 35514888 35518920 Sto6g2828 6 35514888 35518920 ECH