Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2826 ATGGCCACCGTCGCTGCGGCTCGAGGAATCGGCGTCGGAGTCACGAAGCTCCACCAGAAGCCTCACCACACCAACTCCAACCACAAGTCCCTCTTTCTCGGCCACAAGCTTCGAATCAAGCCCTTCGAATTGGAATCCCTAAGAACGCGAACCTTCTCGAACCCTAGATCCTTCGTGGCCTTCGCGTTCGGAGGCGAATGGCTCCATTCCGCCGTTCACGACCTCTTCGTCGGCGTCGGCGTAGGGCTTCCCTGCACCGTCATGGAGTGCGGTGATATAATTTACCGAAGCACGCTTCCCAAGTCGAATGGCTTGACGCTTACGGCACCAGGGGCCGTTCTGGCTCTCGGTGCTCTGTCCTACCTCTGGGCTACGCCCGGCGTGGCCCCTGGTTTCTTCGATATGTTTGTTCTTGCTTTTGTTGAGAGATTGTTCAGACCTACTTACAGAAAGGATGACTTTGTTCTGGGGAAGAAGTTGGGGGAGGGATCATTTGGAGTGGTTTATAGGGTTTCGTTGGCCAAGAAGCCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGTGCAGTAGAAATTTGGATGAATGAGCGTGTGCGAAGAGCATGTGCGAACAGCTGTGCTGATTTCGTTTACGGCTTCCTTGAGAGTTCTGCAAAGAAAAGTGGTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGATCTAATTCAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGAAAGGTCCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATAGAATTATTCAGACAATTATGAGGCAGATCTTATTTGCATTGGATGGTCTTCATTCAACTGGAATTGTGCATAGGGATATTAAGCCGCAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATCATTGATCTTGGAGCAGCAGCAGATCTGCGTGTTGGCATTAACTATATTCCTAAGGAATTTCTTTTGGATCCAAGGTATGCTGCACCAGAGCAGTACATCATGAGCACGCAAACTCCCTCTGCACCCTCAGCTCCAGTTGCAACTGCACTTTCCCCAGTTCTATGGCAGTTGAATCTACCTGACAGATTTGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCATTCCCTGGATTACGCAATGATAACTGCCTCATACAATTTAACCGTCAGTTGAAGAGGTGTGACTATGACTTAGTTGCATGGAGAAAATCTGTAGAACCTCGATGTGGATCTGATCTCAGGAGGGGTTTTGAGCTTCTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTCCGATACAAAGCACGGCAAAGACTCAGTGCAAAAGGAGCATTAGCTCATCCCTACTTTGACAGGGAAGGCTTGTTAGCACTGTCTTTTATGCAAAATCTAAGGCTGCAGCTCTTACGGGCAACACAACAGGATTATGGGGAAGCAGCTAACTGGATTATTCGGCTCATGGCGAAATCTGGAACAGCACAAGATGGAGGATTTACTGAAGCTCAGCTCCTGGAACTAAGAAAAATTGAgccaaagaagaagaatagtGCACAGAGAAATGCTCTAGCCTCGGCTCTCAAACTCCAgaggaaaattataaaaacctTGAACGAGAGTATGGATGAGCTTAATCAACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA 1749 0.4631 MATVAAARGIGVGVTKLHQKPHHTNSNHKSLFLGHKLRIKPFELESLRTRTFSNPRSFVAFAFGGEWLHSAVHDLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTLTAPGAVLALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRVSLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSAKKSGEYWLIWRFEGDATLADLIQSKEFPYNVETMILGKVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRNDNCLIQFNRQLKRCDYDLVAWRKSVEPRCGSDLRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKGALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAANWIIRLMAKSGTAQDGGFTEAQLLELRKIEPKKKNSAQRNALASALKLQRKIIKTLNESMDELNQRRKSLWWSRWIPREE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2826 582 CDD STKc_SNT7_plant 158 472 - -
Sto6g2826 582 Gene3D Phosphorylase Kinase; domain 1 140 234 - -
Sto6g2826 582 ProSiteProfiles Protein kinase domain profile. 154 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g2826 582 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 13 582 - -
Sto6g2826 582 SMART serkin_6 154 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g2826 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Sto6g2826 582 Pfam Protein kinase domain 155 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g2826 582 SUPERFAMILY Protein kinase-like (PK-like) 139 474 IPR011009 -
Sto6g2826 582 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 13 582 IPR044803 GO:0004674|GO:0009579
Sto6g2826 582 Coils Coil 548 568 - -
Sto6g2826 582 Gene3D Transferase(Phosphotransferase) domain 1 262 476 - -
Sto6g2826 582 ProSitePatterns Protein kinases ATP-binding region signature. 160 187 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2826 Sto-Chr6 35489529 35494063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2826 272 473 Core Cell Cycle Gene Families AT2G38620 30.986 1.52e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sto6g2826 Pkinase 2.2e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2826 6 35489529 35494063 Sto6g2826 6 35489529 35494063 ECH