Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2823 atggatGCAGGAAGTTGTATAGACGAAAGCACCACAACGGATTCGATTTCTGTTTCGCTTTCTCCGGCGGCGGCGCAGAAACTGTCTCCGCCGCCGCCGAACAGTCTCTGCCGCGTCGGAAGCGGCGCGAGCACCGTCGTGGACTTCGACGGCGGCGTCGAGGCGGAGTCGCGGAAGCTCCCGTCGTCGAAATACAAGGGCGTTGTCCCGCAGCCAAATGGCCGTTGGGGAGCGCAGATTTACGAGAAGCACCAGCGAGTCTGGCTCGCGAGGTTCCTCAACTCGCATTCGAAAGCCGAGATCGTCGATATGCTCAGGAAGCACACTTACAATGACGAGCTCGAGCAGAGCAAGCGCAACCAGAGCTACGTGCTCACCAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGGGATACGGTCTGTTTCCATCGGTCAACCGGACCGGACAAGCAGCTTTACATTGACTGGAAAGACAGGAATAGTACCACCATCGGGTTTATTGACCCGGTCGGACCGGTGGTGGAGCCGGCGGTTCAAATGGTGAGGCTATTTGGAGTCAACATTTTGAAAATGCCCGGTTCTTCTGATGCTATTGGTTCTACCAGTGGATGCGGTAAAAGAAGAGACATGGATCTGTTTACTCTAGAGTgtaccaaaaaacaaaaaattattggtGCTTTGTAA 696 0.5273 MDAGSCIDESTTTDSISVSLSPAAAQKLSPPPPNSLCRVGSGASTVVDFDGGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLARFLNSHSKAEIVDMLRKHTYNDELEQSKRNQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKDRNSTTIGFIDPVGPVVEPAVQMVRLFGVNILKMPGSSDAIGSTSGCGKRRDMDLFTLECTKKQKIIGAL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2823 231 MobiDBLite consensus disorder prediction 1 24 - -
Sto6g2823 231 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 92 IPR044800 GO:0003700
Sto6g2823 231 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 121 231 IPR044800 GO:0003700
Sto6g2823 231 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 91 120 IPR044800 GO:0003700
Sto6g2823 231 MobiDBLite consensus disorder prediction 1 36 - -
Sto6g2823 231 Gene3D - 54 171 IPR015300 -
Sto6g2823 231 Pfam B3 DNA binding domain 101 163 IPR003340 GO:0003677
Sto6g2823 231 CDD B3_DNA 118 149 IPR003340 GO:0003677
Sto6g2823 231 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 121 231 - -
Sto6g2823 231 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 91 120 - -
Sto6g2823 231 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 4 92 - -
Sto6g2823 231 ProSiteProfiles AP2/ERF domain profile. 64 104 IPR001471 GO:0003700|GO:0006355
Sto6g2823 231 SUPERFAMILY DNA-binding pseudobarrel domain 107 163 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2823 Sto-Chr6 35438379 35439530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2823 121 230 RAV Transcription Factor Family AT1G13260 47.273 2.82e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto6g2823 B3 2.9e-11 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2823 6 35438379 35439530 Sto6g2823 6 35438379 35439530 ECH