Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2820 atgcaaACTCATAGCCCTAATTTCTGCTTCTCATtgaatgatgaagaagaagaagaagaagaagatgaagaaaactccatttttctctctcttgctCCTCCTGGCCAATCCCATAGTACTACCAAAGCCAATAGGGCAACAATAAGATCAGCAATCCCATTCCCCACCAGAAACGACGTCGTAATTTCATCATTACCTCAAAACCCTAACGATGATGCCGGTGCCGTCACCGTCGCCCTCCATATCGGCCTCCCtcgtaataataataataattccacCAAACCCGACCCGTTGTTGATGGGATCTTCGTCGTTGTCGTTGTCGTCGTCTTCGCGTAATTCGTCTTCTTCGGGCGGTTGTAACTCGGATTCAACTTCGTGggcgggtccgggtccgggtccgggtcaaGTGGTTGTCGCGGGTCAGTATTGGATACCCTCGCCGGCGCAGATACTGATAGGGCCCACACAGTTCTCTTGCTCTGTGTGCAACAAAAGCTTCAACCGTTTCAACAACATGCAGatgCATATGTGGGGGCATGGTTCGCAATACAGAAAAGGGCCAGAATCCCTCAGAGGGGCAAAACCGTCATCTTCAATCCTAAGACTCCCTTGCTATTGTTGTGCTGAGGGCTGCAAGAACAACATCCACCATCCAAGGTCTCGCCCTCTCAAGGACTTCCGAACCCTCCAAACCCACTACAAGCGCAAGCACGGCGCCAAGCCCTTCGCCTGCCGGAAGTGCGCCAAGCCCTTCGCCGTCCGGGGCGACTGGCGGACACACGAGAAGAATTGTGGGAAACTTTGGTTTTGTATTTGTGGCTCGGATTTCAAACACAAGAGATCTCTCAAGGACCATGTCCGCGCTTTCGGGGATGGCCACTCCCCCCACACGATCGACGGCTATGATAAGCTCGACCGCGGTGGTGCTATTGCTGGTAGTGGTGATTTTGAGGAAGATAATAATGATGATCAGGATGAGGATGAGGACGAGGACGAGAATAATGATGAAAATCATTATGCATCTATttacttttaa 1038 0.4518 MQTHSPNFCFSLNDEEEEEEEDEENSIFLSLAPPGQSHSTTKANRATIRSAIPFPTRNDVVISSLPQNPNDDAGAVTVALHIGLPRNNNNNSTKPDPLLMGSSSLSLSSSSRNSSSSGGCNSDSTSWAGPGPGPGQVVVAGQYWIPSPAQILIGPTQFSCSVCNKSFNRFNNMQMHMWGHGSQYRKGPESLRGAKPSSSILRLPCYCCAEGCKNNIHHPRSRPLKDFRTLQTHYKRKHGAKPFACRKCAKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHSPHTIDGYDKLDRGGAIAGSGDFEEDNNDDQDEDEDEDENNDENHYASIYF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2820 345 Gene3D Classic Zinc Finger 157 180 - -
Sto6g2820 345 MobiDBLite consensus disorder prediction 301 345 - -
Sto6g2820 345 SUPERFAMILY beta-beta-alpha zinc fingers 151 180 IPR036236 -
Sto6g2820 345 SUPERFAMILY beta-beta-alpha zinc fingers 229 263 IPR036236 -
Sto6g2820 345 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Sto6g2820 345 Gene3D Classic Zinc Finger 239 297 - -
Sto6g2820 345 MobiDBLite consensus disorder prediction 317 336 - -
Sto6g2820 345 MobiDBLite consensus disorder prediction 85 132 - -
Sto6g2820 345 PANTHER ZINC FINGER PROTEIN WIP6 1 337 - -
Sto6g2820 345 MobiDBLite consensus disorder prediction 85 129 - -
Sto6g2820 345 PANTHER ZINC FINGER PROTEIN WIP2 1 337 IPR043584 GO:0003700|GO:0010468
Sto6g2820 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2820 Sto-Chr6 35418461 35420503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2820 23 299 C2H2 Transcription Factor Family AT1G13290 62.950 3.17e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto6g2820 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2820 6 35418461 35420503 Sto6g2820 6 35418461 35420503 ECH