Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2800 ATggcttcttctccttttctttcacaTTCCACCTCCTCCACCCCTGCCACCACCATTTCTTTCTCCTCTTCTCTCTCCACCCCCCTCCCATGGCGCAAGTTCGTCGCATTCCCCTGCAAGCCTCGCCGGAGATCCTTCTCCGTTCAATCCAAGATCAGAGAAATCTTCATGCCCGCCCTCAGCTCCACCATGACCGAGGGTAAGATCGTCTCCTGGGTTAAATCTGAGGGCGATGTGCTCTCCAAGGGCGAGAGTGTTGTCGTTGTCGAGTCCGATAAGGCCGATATGGACGTCGAGACTTTCTATGATGGGATTCTCGCAGCTATTGTAGTTGGCGAGGGTGAATCTGCTCCTGTTGGTGCTCCGATTGGGTTGTTGGCGGAGACGGAAGAGGAAGTCGCGGAAGCTAAGGCTAAGGCAGCGAAATCCGGCTCTTCCGCCGCCCCCGCGGCCTCTGTTGCTCCTACTCCTCCGCCGAGTGCTTCCAATCCCGCGCCGGCGATTGCTCAGCCGGCGCCGGCTAAGGTGGCTTCTGCTGGACCAGGTAAGACCGTGGCGACGCCTTATGCAAAGAAGCTCGCCAAGCAGTATAAGGTAGATATTGGATCGGTGGTTGGGAGTGGTCCTTATGGGAGGATTACTCCTGCGGATGTGGAGGCTGCTGCTGGAGTCACACCTTCCAAGAGCAATGTGGCTAAGATTGCTGAGCCTGCGCCGGCGGCTGCAACTCCACCTAAAGCTGCTGCTGCCGCTGCCACCGTGCCGGCGGCTTCTCTGCCTCCAATTCCAGGTTCTACGGTTGTTCCTTTCACAACAATGCAATCTGCGGTTGCAAAGAACATGCTGGACAGTCTTACTGTGCCTACATTCCGTGTTGGGTATCCTGTGATGACTGATGCACTTGATGCTTTGTATGAGAAGGTGAAACCAAAGGGTGTGACTATGACTGCCCTTCTAGCGAAGGCCGCTGCAATGGCTCTTGTTCAGCATCCAGTAGTGAATGCTAGCTGCAAAGATGGGAAGAACTTTACTTATAATAGCAACATAAATATAGCTGTTGCTGTGGCAATCAATGGTGGGTTAATAACACCTGTTCTTCAGGATGCGGATAAGTTGGATCTATATCTGTTGTCCCAAAAATGGAAAGAGCTGGTGGAAAAAGCTCGAGCAAAGCAATTGCAACCTCATGAGTATAATTCGGGAACTTTCACACTTTCCAATTTGGGTATGTTTGGAGTTGATAGATTTGATGCCATACTTCCTCCAGGCCAGGGAGCTATTATGGCTGTTGGAGCGTCAAAGCCTACTGCTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAAAATAAAATGCTGGTGAATGTAACGGCTGATCACCGAATAATCTATGGGGCTGACTTGGCTGCATTCCTTCAGACATTCTCAAAAATCGTTGAAAACCCAGAAAGCTTAACATTGTAG 1461 0.5051 MASSPFLSHSTSSTPATTISFSSSLSTPLPWRKFVAFPCKPRRRSFSVQSKIREIFMPALSSTMTEGKIVSWVKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGEGESAPVGAPIGLLAETEEEVAEAKAKAAKSGSSAAPAASVAPTPPPSASNPAPAIAQPAPAKVASAGPGKTVATPYAKKLAKQYKVDIGSVVGSGPYGRITPADVEAAAGVTPSKSNVAKIAEPAPAAATPPKAAAAAATVPAASLPPIPGSTVVPFTTMQSAVAKNMLDSLTVPTFRVGYPVMTDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKNFTYNSNINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTALADKDGFFSVKNKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2800 486 Pfam e3 binding domain 185 219 IPR004167 GO:0016746
Sto6g2800 486 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 185 222 IPR004167 GO:0016746
Sto6g2800 486 MobiDBLite consensus disorder prediction 1 25 - -
Sto6g2800 486 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 179 222 IPR036625 GO:0016746
Sto6g2800 486 Pfam Biotin-requiring enzyme 54 124 IPR000089 -
Sto6g2800 486 ProSiteProfiles Biotinyl/lipoyl domain profile. 52 130 IPR000089 -
Sto6g2800 486 Gene3D - 248 485 IPR023213 -
Sto6g2800 486 MobiDBLite consensus disorder prediction 152 166 - -
Sto6g2800 486 MobiDBLite consensus disorder prediction 136 182 - -
Sto6g2800 486 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 16 486 - -
Sto6g2800 486 SUPERFAMILY Single hybrid motif 51 143 IPR011053 -
Sto6g2800 486 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 77 106 IPR003016 -
Sto6g2800 486 Gene3D - 47 152 - -
Sto6g2800 486 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 16 486 IPR045257 GO:0006086|GO:0045254
Sto6g2800 486 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 265 485 IPR001078 GO:0016746
Sto6g2800 486 CDD lipoyl_domain 54 126 - -
Sto6g2800 486 SUPERFAMILY CoA-dependent acyltransferases 264 485 - -
Sto6g2800 486 Gene3D - 181 223 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2800 Sto-Chr6 35221549 35225732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2800 17 486 Acyl Lipid Metabolism Gene Families AT3G25860 73.263 0.0 642
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2800 6 35221549 35225732 Sto6g2800 6 35221549 35225732 ECH