Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2793 ATGAAGATGAAACATCCAAAGCTAAATCATCATCACTTTCACGAACTTCCCACCAGAAAGCTTCGCATAATCTGTGACGACCCTGAAGCTACAGATTCATCCTCAAGCGAAGACGAAGAAACAGCGAAGAAGTTTTCGAGAAGGCCAAGGAAGATGAAGCGAATCGTTCACGAACTCACCCTCCCTCTCGATTCTTCATCCACTGAAGCAGCAAACGAGACATCATTTCAGGAAAGCAATAATGttcaaaaaccccaaaaccccatttCGAAGAAGAGGGTTTTGGCTCCTCCGTCATCGAGAAGCTCGTCGTCTTCTTCCTCGAGATACAGAGGAGTTCGTCAGAGAAAATGGGGGAAATGGGCCGCCGAAATTCGCGACCCGTTCAAAGGCGTTCGAATATGGCTGGGAACTTACAATACAGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAGGGAGGAGTTCGAATCCATGGCCAAAGCAGCTCAATCCTCGAAAACGACAACAACCTCAGACGATTCCGAAAGTGTCTTTTCCCAGACATCTCCTTCCTCTGTTCTCGAACTCGACACCTCAACCTCAAAATCCCCAGAAGTCACTAACAATGATGGCAAGAAAGAAGGCGAAGAAGAAGCTGAAGCTGAAGCAGCTATGGAGGGCAATGATTTCGAGACTGAATTTGCAGAACTTCAAATCCCAGATTTGAGCTTCCTGAATGAACCACCCCCACCATTGGAATTACCAGCTCCAACAATTCCACCTGATAATGTTGTCTCGGACAACACAAACCTAGGATTCGACCTGGATTGGATGATGTTCGATGATTTCGGCCAGAGCTTCGAATTGGATGATGAGCCATTTGGGCTAGAAGATTTTCAGATTTGTGGGTTTGAAGATGAAATTAACAACAACCCCAGTGAGCTTCCTGATTTCGATTTTGATCTTTGTGTGGACGAATTTGCTGGTTGGACTGAAGAACCCCTCAATATACCTTGCAGTTGTTTAAGGAATCTGTGTATTGTTTTTGAGGCTGTGAGAGAAAAGAGGTATTGTATTGTAGAAGAGAATGCCTTTGGGTTTTCTTGTGCTATTAGAGCCGTCCAAGGGATCTCAAATCTTAAGCTTTGA 1131 0.4385 MKMKHPKLNHHHFHELPTRKLRIICDDPEATDSSSSEDEETAKKFSRRPRKMKRIVHELTLPLDSSSTEAANETSFQESNNVQKPQNPISKKRVLAPPSSRSSSSSSSRYRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAEEASQAYESKREEFESMAKAAQSSKTTTTSDDSESVFSQTSPSSVLELDTSTSKSPEVTNNDGKKEGEEEAEAEAAMEGNDFETEFAELQIPDLSFLNEPPPPLELPAPTIPPDNVVSDNTNLGFDLDWMMFDDFGQSFELDDEPFGLEDFQICGFEDEINNNPSELPDFDFDLCVDEFAGWTEEPLNIPCSCLRNLCIVFEAVREKRYCIVEENAFGFSCAIRAVQGISNLKL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2793 376 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 6 333 - -
Sto6g2793 376 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 333 - -
Sto6g2793 376 MobiDBLite consensus disorder prediction 26 117 - -
Sto6g2793 376 Coils Coil 139 162 - -
Sto6g2793 376 MobiDBLite consensus disorder prediction 96 112 - -
Sto6g2793 376 MobiDBLite consensus disorder prediction 161 200 - -
Sto6g2793 376 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Sto6g2793 376 MobiDBLite consensus disorder prediction 61 88 - -
Sto6g2793 376 CDD AP2 110 149 IPR001471 GO:0003700|GO:0006355
Sto6g2793 376 SUPERFAMILY DNA-binding domain 108 154 IPR016177 GO:0003677
Sto6g2793 376 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Sto6g2793 376 MobiDBLite consensus disorder prediction 144 216 - -
Sto6g2793 376 Gene3D AP2/ERF domain 108 162 IPR036955 GO:0003700|GO:0006355
Sto6g2793 376 SMART rav1_2 109 177 IPR001471 GO:0003700|GO:0006355
Sto6g2793 376 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Sto6g2793 376 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2793 Sto-Chr6 35133735 35134981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2793 17 333 AP2-EREBP Transcription Factor Family AT1G68550 37.082 4.09e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto6g2793 AP2 3.4e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2793 6 35133735 35134981 Sto6g2793 6 35133735 35134981 ECH