Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2773 ATGTCTGCAACTGCAAACCCAGAATTATTAGTGtcaaatgaagaagaaactGAGCTTAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCTTGCTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGtgcagGATTGAAGAGGACTGGGAAAAGCTGCAGATTGAGGTGGTTGAACTACTTGAAACCAGACATCAAGAGAGGGAATCTCACCCCACAGGAACAGCTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAATAGGTGGTCGAAAATTGCTCAGCATCTTCCGGGAAGAACGGACAACGAAATCAAGAACTACTGGAGGACAAGAGTTCAGAAACAGGCTCGCCAGCTCAACATCGAGTCCGGTAGCGACCGGTTCATCGACGCGGTCCGATGTTTCTGGATGCCCAGGTTACATCAAAAGATAGAACAAAACTCTTCCTCCTCGTCCTCGAACATTCTCAACTATGAGAATTCTGGTGCCAATAATAATGTCCCTTCTTCTTTGTCTCCTCCTCAAGGGGAATTCACAGATACTATTGCAGAAAATCATTGTTCTTTGCAATTTCAAGACCAAACAAGAAGTGACCAGCTTCCCTTTGAGaatgacaataataataataataataataatgttaatGTTTGCTATAATCCTATTATCTATGGCTatggcatggaaggtgtgaACTTGGAGGAATTTCCAATGGTGGAAACAAGTTGTGGTGGAATTTCTAATTATTCCCAATTTGATTATTACTCTCAGAGTTCAGAGAATGATTGGGTGTTAAACAACATGGGAGATGCTTTGTGGAACAATATGGATCAAATGTGA 858 0.3939 MSATANPELLVSNEEETELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSDRFIDAVRCFWMPRLHQKIEQNSSSSSSNILNYENSGANNNVPSSLSPPQGEFTDTIAENHCSLQFQDQTRSDQLPFENDNNNNNNNNVNVCYNPIIYGYGMEGVNLEEFPMVETSCGGISNYSQFDYYSQSSENDWVLNNMGDALWNNMDQM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2773 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Sto6g2773 285 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Sto6g2773 285 MobiDBLite consensus disorder prediction 154 186 - -
Sto6g2773 285 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 36 45 IPR001345 GO:0003824
Sto6g2773 285 CDD SANT 78 117 IPR001005 -
Sto6g2773 285 SMART sant 73 121 IPR001005 -
Sto6g2773 285 SMART sant 20 70 IPR001005 -
Sto6g2773 285 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Sto6g2773 285 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Sto6g2773 285 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Sto6g2773 285 Gene3D - 77 119 - -
Sto6g2773 285 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto6g2773 285 CDD SANT 23 68 IPR001005 -
Sto6g2773 285 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 12 214 - -
Sto6g2773 285 Gene3D - 18 74 - -
Sto6g2773 285 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Sto6g2773 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2773 Sto-Chr6 34861248 34862394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2773 16 160 MYB Transcription Factor Family AT1G68320 82.759 8.67e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g2773 Myb_DNA-binding 2.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2773 6 34861248 34862394 Sto6g2773 6 34861248 34862394 ECH