Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2710 ATGGATTCTTCGTTCTCTTTCGTATTCACTGATCTGAAAGTGGATGAATGCGTTCGGTTCGAACGAGTTCTTGAGTTTTGTAAAAATGGAAATATTGAAGTCTCGAAAATGCATAATAAAGACGCTTGCTCTCCCTCCTCCAACGGCGGACTTGCCACCAACCAAATGCAGTCAAATGGCGCCGGTTTGGGTCCCCTCTACTCTACTTTGTTCTCTGACAAGCCGTCTCTCTCAACCACCAGCAATGGCGGCGTCTCGATTAACCCTTATGAAGGAAACTCTCCGTCGAAATTCAACGACTCTGCGATTCAGAGTCACCTGTACGACTCCTGCGCCATACAAAAGCACCAAGATATGGTGAACCGGCATACTATGTGCCTAAATCGCCTCGCCGAGACTACGAAGGAGGTCGAGGCTCTGCGACATGAGAACACCCAACTTCGGGCTGTCAATAGGGAGCTGAACAAGCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAGTTGGATGGTTCCTCTGGCCATTCGGAAGCGTTTGATGTTGTAAATGGGTTTCGTGGCTTGCATATTGCGGACAATTTCGGGGAGGGAAAGGAGAACTGCGCTGATTGGAATAAGGATCAGGAAGTTTCGAACGAGAGCCCAACTAGCGTGATTGAGAACACTGTGGAAGTGGAGAGGTTCTCGCTGCCGAAGAGCATATCTGTGAGGTCAAATGGGTACTTGAAGGTGGCTCCTCAGACTGTGGCCGGTGCCAGCAGCCAAGGCAATCGTACTAAGGGCCCTACCCGGCCACGCACGTCTTCGACTCCACCTGATGTCGTTCAAAAGGTATATGTGCGTGGAGGGAAGGAGGAAGAGCCTCTTGAGATGGTAGTGTATAACCAAGGGATGTTTAAGACTGAGCTGTGCAACAAATGGCAGGAGACTGGGACATGCCCATATAAGGATCAGTGCCAATTTGCTCACGGTATTGATGAGCTTCGCCCGGTGATCCGCCACCCACGCTACAAAACTGAAGTCTGCAGAATGGTCCTAGCGGGCGTTGTATGCCCCTATGGCCATAGGTGCCATTTCCGCCATGCACTCACTGAACAGGAGAAAGCCATAGCACAGCCTAAGCCCAGCAGGGCAATGAACCTGCACAGATAA 1155 0.5065 MDSSFSFVFTDLKVDECVRFERVLEFCKNGNIEVSKMHNKDACSPSSNGGLATNQMQSNGAGLGPLYSTLFSDKPSLSTTSNGGVSINPYEGNSPSKFNDSAIQSHLYDSCAIQKHQDMVNRHTMCLNRLAETTKEVEALRHENTQLRAVNRELNKQLSLLIQVSVQNQLDGSSGHSEAFDVVNGFRGLHIADNFGEGKENCADWNKDQEVSNESPTSVIENTVEVERFSLPKSISVRSNGYLKVAPQTVAGASSQGNRTKGPTRPRTSSTPPDVVQKVYVRGGKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIDELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKPSRAMNLHR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2710 384 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Sto6g2710 384 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Sto6g2710 384 SUPERFAMILY CCCH zinc finger 296 331 IPR036855 GO:0046872
Sto6g2710 384 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Sto6g2710 384 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Sto6g2710 384 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Sto6g2710 384 PANTHER CCCH ZINC FINGER/TIS11-RELATED 85 376 IPR045877 GO:0003729
Sto6g2710 384 Coils Coil 130 157 - -
Sto6g2710 384 MobiDBLite consensus disorder prediction 248 274 - -
Sto6g2710 384 Gene3D - 333 369 - -
Sto6g2710 384 Gene3D - 294 332 - -
Sto6g2710 384 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 85 376 - -
Sto6g2710 384 SUPERFAMILY CCCH zinc finger 333 367 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2710 106 382 C3H Transcription Factor Family AT1G68200 51.211 7.14e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto6g2710 zf-CCCH 5.3e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2710 6 34284339 34286517 Sto6g2710 6 34284339 34286517 ECH