Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2691 ATGGCTTCACGCAGACTCGTATCTTCTCTGATTCGATCCTCGCTTCGTCGATCTCCGGCCAAGTCCTCTATCACTAATTCGACTCCTAGGCTTTCTTCCTCCACCACGCGTGCTTCTCCCTATGGCTACCTCCTTAACCGTGTAGCTGAGTATGCCACCTCCGCCGCAGCTGCTGCTGCTCCGCCCGCTCCGGCGAAGAAGGATGCCGGAAGCGGCGGCGGCGGGAAGATTGTTGATGAGTATACTGGAAAAGGTGCGATAGGCCAGGTGtgccaggtcatcggtgccgtCGTCGATGTTAGATTCGAGGAGGGTTTGCCTCCGATCCTGACTGCGCTTGAGGTTCTGGACAATTCGATTCGGTTGGTGTTGGAGGTGGCTCAGCATTTGGGGGAGAACGTGGTGAGAACTATTGCTATGGATGGAACTGAAGGGCTTATCAGAGGACAGCGCGTGCTCAACACTGGGTCTCCTATTACCGTTCCTGTTGGCAGGGCTACTCTTGGCCGTATCATTAATGTTATTGGAGAGCCCATTGATGAGAAGGGTGATATCCAGACTGAGCACTATTTGCCTATTCATAGAGAAGCTCCTGCATTTGTTGAGCAAGCAACTGAACAGCAGATCCTTGTTACTGGAATTAagGTTGTTGACCTTCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATCAACAATGTTGCCAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGAGAAGCAGAGTGATAGTAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCCCGTGCTCGTGTTGGTCTGACTGGGCTTACTGTTGCTGAACATTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTCATTGACAACATTTTCCGCTTTACCCAAGCCAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCAACCAACCTTGGCCACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAAGGTTCAATTACCTCTGTCCAGGCTATCTACGTGCCTGCTGATGACTTGACAGATCCAGCTCCTGCTACCACTTTCGCTCACTTGGATGCCACAACTGTGTTGTCACGACAGATCTCCGAGTTGGGTATCTATCCTGCTGTCGATCCCCTAGATTCTACATCTCGTATGCTTTCACCACATATTTTGGGTGAGGATCACTACAATACTGCTCGTGGTGTACAAAAAGTTCTTCAGAACTACAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTTAGTGAAGATGATAAGTTGACTGTTGCACGTGCACGTAAAATCCAACGTTTCTTGAGCCAGCCCTTCCATGTTGCAGAAGTCTTCACTGGTGCCCCTGGTAAATACGTAGAGTTGAAGGAGAGCATCAACAGTTTCCagGGTGTGTTGGATGGAAAATACGATGATCTACCCGAGCAATCGTTTTACATGGTTGGAGGTATCGAAGAGGTCATTGCGAAGGCAGACAAGATCGCCAAGGAATCTACATCTTAA 1677 0.4776 MASRRLVSSLIRSSLRRSPAKSSITNSTPRLSSSTTRASPYGYLLNRVAEYATSAAAAAAPPAPAKKDAGSGGGGKIVDEYTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDNSIRLVLEVAQHLGENVVRTIAMDGTEGLIRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIQTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSDSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKADKIAKESTS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2691 558 Hamap ATP synthase subunit beta [atpB]. 85 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Sto6g2691 558 Pfam ATP synthase alpha/beta family, beta-barrel domain 90 156 IPR004100 GO:0046034|GO:1902600
Sto6g2691 558 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 437 553 - -
Sto6g2691 558 Gene3D - 76 158 - -
Sto6g2691 558 CDD F1-ATPase_beta 158 439 - -
Sto6g2691 558 CDD ATP-synt_F1_beta_C 441 548 - -
Sto6g2691 558 Pfam ATP synthase F1 beta subunit 1 47 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Sto6g2691 558 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 557 - -
Sto6g2691 558 Gene3D - 437 558 IPR024034 -
Sto6g2691 558 PIRSF ATPase_subunit_beta 6 558 - -
Sto6g2691 558 MobiDBLite consensus disorder prediction 1 36 - -
Sto6g2691 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 440 IPR027417 -
Sto6g2691 558 CDD ATP-synt_F1_beta_N 86 159 - -
Sto6g2691 558 PANTHER ATP SYNTHASE 3 557 - -
Sto6g2691 558 TIGRFAM atpD: ATP synthase F1, beta subunit 87 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Sto6g2691 558 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 213 434 IPR000194 GO:0005524
Sto6g2691 558 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 84 158 IPR036121 GO:0046034|GO:1902600
Sto6g2691 558 ProSitePatterns ATP synthase alpha and beta subunits signature. 425 434 IPR020003 GO:0005524
Sto6g2691 558 Gene3D ATP synthase, F1 beta subunit 1 51 IPR042079 -
Sto6g2691 558 Gene3D - 159 436 IPR027417 -
Sto6g2691 558 SMART AAA_5 225 497 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2691 Sto-Chr6 34095612 34099737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2691 123 495 Primary Pumps ATPases(2) AT1G20260 29.426 5.89e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2691 6 34095612 34099737 Sto6g2691 6 34095612 34099737 ECH