Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2677 ATGGGGGATCACTTTGTATTGCTAGTGGATAGATTGCTTACTGAATCCACACTAGAAGCTGCACTTGAAAGCCGAAATCAAACGATGGAGGCAGCTGCATCTTCATCAGTGGAAGGCACAGTAGAAGTTGTTGATGTATCTTTAAAGAAGATGGATGTAGAAGATGAGAAATTGCAGGGGAAACTAGTACAGTGCAAGATATGCCACGATGACGACGAAATTTCCAATATGGAGACACCGTGCGCTTGTTCTGGTAGTTTGAAGTATGCCCACCGGAAATGCATACAACAGTGGTGTAACCACAAGGGCAACACCACATGTGAGATATGCCTCCAGCAATATAAGCCTGATTATAAAGCTTTTCCTCAACTATTTCGATTCGGGCGTGTTCCATTGAGTTTCAGGGGAAATTGGGAGATATCAAGAAGAGACTTGCATGGTGCCACTCAAATTCGTGTGGTGTCGCCTTCCCAGAATTTAACCTATGTTAACTGCTTTCACCCTTCTGTTCATGATTCTACTGATTATGATACATTTTGTTCCTCTCCTCCAACTGTTAGACAATTTGGAATATTCCGTCCCACTCTTAACGATAATACTACTGCGGATCTTGGGTGTTGCTCTGCCTATATACATCGCGTTGAGAGCTGTGACATTTCTTCAGCAGCTTCGGCAACTAGCACGAAGGTGCCTTATGTTTGTTTGCCAATGGGAAACAATCAGGAACCTTCTAATGTATCTGGCAATCAATCCGACAGTCGAATCGAGCAACCGGCTTTGCAGCCTCGGCCTCTAGTCGATCGCATGAAGACTTCTTTCACAGTTGGTGGAAGTGAGGATAGAATTGTTGCAGAATAG 858 0.4406 MGDHFVLLVDRLLTESTLEAALESRNQTMEAAASSSVEGTVEVVDVSLKKMDVEDEKLQGKLVQCKICHDDDEISNMETPCACSGSLKYAHRKCIQQWCNHKGNTTCEICLQQYKPDYKAFPQLFRFGRVPLSFRGNWEISRRDLHGATQIRVVSPSQNLTYVNCFHPSVHDSTDYDTFCSSPPTVRQFGIFRPTLNDNTTADLGCCSAYIHRVESCDISSAASATSTKVPYVCLPMGNNQEPSNVSGNQSDSRIEQPALQPRPLVDRMKTSFTVGGSEDRIVAE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2677 285 ProSiteProfiles Zinc finger RING-CH-type profile. 57 117 IPR011016 GO:0008270
Sto6g2677 285 MobiDBLite consensus disorder prediction 241 257 - -
Sto6g2677 285 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 161 IPR033275 -
Sto6g2677 285 PANTHER OS01G0121200 PROTEIN 1 161 - -
Sto6g2677 285 MobiDBLite consensus disorder prediction 241 285 - -
Sto6g2677 285 SUPERFAMILY RING/U-box 63 115 - -
Sto6g2677 285 CDD RING_CH-C4HC3_MARCH 65 110 - -
Sto6g2677 285 Pfam RING-variant domain 65 110 IPR011016 GO:0008270
Sto6g2677 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 121 IPR013083 -
Sto6g2677 285 SMART ringv_2 64 111 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2677 Sto-Chr6 33950979 33955984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2677 65 110 C3H Transcription Factor Family AT2G37950 44.898 4.54e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2677 6 33950979 33955984 Sto6g2677 6 33950979 33955984 ECH