Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2669 ATGCAAGCAGAAACATTTTCTGAAGCCAGTGACATGAACCTAGATGCCATTAATTGTCTCCCCCCTGAAAgaatttgtaaaattttatcCGACAATCCTAATTCTAGCGTTGAGGCATCACTCAGTCATGTTCTTGTGGAGGTACCCCCAGAACTTGTCGTTGAGGTGTTGAAGAAGCTAAGCAATGCAGGTGTTCTCGCACTTTCATTCTTTCGTTGGGCTGAGAAGCAAAAGGGGTTCAAATACAGTACAGAGAGCTACAATGCTTTGATTGAGGCATTGGGTAAGATCAGACAGTTCAAGatggtttggaatttagttGATGACATGAAGCATAAAAAGTTGCTGGCTAAAGACACTTTTGCATTGGTTGCTCGGAGATATGCAAGAGCTAGAAAGGTCAAAGAAGCAGTGGAGACCTTTGAGAAGATGGAGCGGTTTGGAATGAAACTGGAAGTTTTGGATTATAATAGATTGATAGACATTTTGAGCAAGTCAAGGTGTATTGAGAAAGCACAGGATTTGTTTGACAAAATGAAGAATGAAAGGTTCACACCCGACGTCAAGTCTTACACAATATTGCTAGAAGGGTGGGGTCAGCAACAAAATTTGTTGAGGCTCAATGAGGTCTATCGGGAGATGAAGGATGAAGGTTTTGAGCCAGATGTTGTTACCTATGGTATTATCATCAGTGCACATTGTAAGGCTAGGAAATATGATGAAGCTGTTGGGTTCTATCATGAGATGGAAGCAAAGAATTTGAGGCCGACTCCTCATATATTTTGTACTTTGATTAATGGGTTGGGTTCCGAGAAGAGATTGGATGAAGCTCTTGAATTCTTTGAAAAATCCAAGATTAGTGGTTTTCCCCTAGAAGCACCAACTTACAATGCTGTTATTGGGGCTTACTGCTGGTCAGTGCGGATGCATGATGCATACAAGATGGTTGATGAAATGAAAAAATGTGGGGTTGGTCCAAATTCTCGAACATTTGACATAATACTACATCACTTGATAAAGGCccgaagaaaaaaagaagcctACTCTGTTTTCCAGAGAATGAGTAGTCAGTTTGGATGTGAACCAACAGTCAGCACATATGAGATCATAGTGAGGATGTTTTGTAATGAAGATCGAGTTGATATGGCAATCAGGGTTTGGGAACaaatgaaggttaagggaattCTTCCTGTAATGCATATGTTCTGCACTTTAATCAACGCATTGTGCCTTGAAAACAAATTAGATGATGCTTGTAAATACTTTCAAGAGATGTTGGATGTGGGCATTCGACCTCCTGGCCCAATGTTTAGCAACTTGAAACAAGCTCTTCTTGATGGAGGGAGGGAGGATACTGTGAAAGTGTTGGCTCTGAAGATTGATAAACTGAGGAAAACTCCCTTAATTGCAACAGAAATTCTACTTGGAGTTGTGGAAAGGAATTTGGAGCTCAGCGCCATAGCTGATATGTCTGTGAATGGGATGAGGCAGCCAGAGCTTCTTTCATCCTTCAACTCAACATCCGCTTGCCCTAGCACCCCAACCACACCTCGTCTTCGCGTAGCTTCCTCGATTCGCAGTCGAAGCTTCGCATTGCACTCCGTTCATCCTCGTCACTCTTCAGGTTCGGAAATCTCTCTACTCTCCCCTATTGATTTCTGTATTTCGATTTCGATGCTTCTGGTTCCCTCTGTGCCTGAACAAGTTAATACGATTGCACATCTTGCTTTTAATACCGTTGGGACATTGCAAAGGGATGCTCCTCCTAATCGGCTGTCTCCAAATTACCCTGAACCTCCTGCACATCCAACGGAGGATGCAGCAAATTTTGCAGAACAGCCAAAGCTTATGAGTGCTGCATTGATAAAGGCTGCTAAGCAGGAACAAGGTAATCAAGGTCGCCATTCAAGATCGCCATCTTTTGGCAGCAGAGCTTTTCCTCCACTTGCATCATTGTGCATATATGCCATCCATTGCTTCTCTCCTCTGCCTCGACAATCGATTGTGAATCTCGGAACCACCGGCTTTCAACTATCCAAGGCCTCTTGTCAGACCTTCCAAGCTCCAACCGGCTGCTCTGGTAGATTAGGCAATGGTACCTACGCCACCAGTGACTACAGCTCCGGCGGCATCAATTGTGGCGGCATTGGAGCCACGCTTGCCAAGTTTACTCTCGACTCTAGCGGAGCCTCGCAAGACTACTACGATGTCAGCCTCAACGGCTACAATCTGCCGATGATGGTGGAGGCCAAGAAAGGGTCATCGGGATCGTGCATGGCAACAGGATGCATGGCGGATCTGAACCAGCGGTACAAACAGGAAAATGATGAGTATGAGTCTTag 2343 0.4324 MQAETFSEASDMNLDAINCLPPERICKILSDNPNSSVEASLSHVLVEVPPELVVEVLKKLSNAGVLALSFFRWAEKQKGFKYSTESYNALIEALGKIRQFKMVWNLVDDMKHKKLLAKDTFALVARRYARARKVKEAVETFEKMERFGMKLEVLDYNRLIDILSKSRCIEKAQDLFDKMKNERFTPDVKSYTILLEGWGQQQNLLRLNEVYREMKDEGFEPDVVTYGIIISAHCKARKYDEAVGFYHEMEAKNLRPTPHIFCTLINGLGSEKRLDEALEFFEKSKISGFPLEAPTYNAVIGAYCWSVRMHDAYKMVDEMKKCGVGPNSRTFDIILHHLIKARRKKEAYSVFQRMSSQFGCEPTVSTYEIIVRMFCNEDRVDMAIRVWEQMKVKGILPVMHMFCTLINALCLENKLDDACKYFQEMLDVGIRPPGPMFSNLKQALLDGGREDTVKVLALKIDKLRKTPLIATEILLGVVERNLELSAIADMSVNGMRQPELLSSFNSTSACPSTPTTPRLRVASSIRSRSFALHSVHPRHSSGSEISLLSPIDFCISISMLLVPSVPEQVNTIAHLAFNTVGTLQRDAPPNRLSPNYPEPPAHPTEDAANFAEQPKLMSAALIKAAKQEQGNQGRHSRSPSFGSRAFPPLASLCIYAIHCFSPLPRQSIVNLGTTGFQLSKASCQTFQAPTGCSGRLGNGTYATSDYSSGGINCGGIGATLAKFTLDSSGASQDYYDVSLNGYNLPMMVEAKKGSSGSCMATGCMADLNQRYKQENDEYES 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2669 780 Gene3D Mediator complex, subunit Med21 565 629 - -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Sto6g2669 780 SMART tha2 667 780 IPR001938 -
Sto6g2669 780 Pfam Thaumatin family 674 774 IPR001938 -
Sto6g2669 780 Gene3D Thaumatin 652 780 IPR037176 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 86 115 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 330 364 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 366 397 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 401 432 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 260 289 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 295 327 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 156 188 IPR002885 -
Sto6g2669 780 TIGRFAM PPR: pentatricopeptide repeat domain 120 150 IPR002885 -
Sto6g2669 780 PANTHER OS01G0505500 PROTEIN 23 467 - -
Sto6g2669 780 Gene3D Tetratricopeptide repeat domain 285 356 IPR011990 GO:0005515
Sto6g2669 780 Gene3D Tetratricopeptide repeat domain 215 284 IPR011990 GO:0005515
Sto6g2669 780 Gene3D Tetratricopeptide repeat domain 27 214 IPR011990 GO:0005515
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Sto6g2669 780 Pfam PPR repeat 393 425 IPR002885 -
Sto6g2669 780 Pfam PPR repeat 359 391 IPR002885 -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 362 IPR002885 -
Sto6g2669 780 Gene3D Tetratricopeptide repeat domain 357 492 IPR011990 GO:0005515
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Sto6g2669 780 Coils Coil 764 780 - -
Sto6g2669 780 Pfam PPR repeat 86 113 IPR002885 -
Sto6g2669 780 Pfam PPR repeat 126 148 IPR002885 -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Sto6g2669 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Sto6g2669 780 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 467 - -
Sto6g2669 780 MobiDBLite consensus disorder prediction 584 606 - -
Sto6g2669 780 SUPERFAMILY Osmotin, thaumatin-like protein 670 769 IPR037176 -
Sto6g2669 780 Pfam PPR repeat family 156 197 IPR002885 -
Sto6g2669 780 Pfam PPR repeat family 295 339 IPR002885 -
Sto6g2669 780 Pfam PPR repeat family 221 268 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2669 Sto-Chr6 33838925 33845147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2669 65 451 Glycosyltransferase AT1G05670 25.000 6.52e-32 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2669 6 33838925 33845147 Sto6g2669 6 33838925 33845147 ECH