Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2662 atgagGAAGCCTTGCTGTGAGAAGCAAGAGATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAATTGATTGATTATATCAACAAAAATGGCGAAGGTTGCTGGCGTGCTCTCCCTCAAGCtgcagGATTACTTCGGTGTGGTAAAAGTTGCAGACTGAGATGGATAAACTATCTAAGACCAGATCTTAAAAGAGGAAATTTtgctgaagatgaagaagatctCATCATCAAGCTTCATGCACTCCTAGGCAATCGGTGGTCACTAATAGCTGGAAGATTACCTGGAAGAACAGACAATGAAGTGAAAAATTATTGGAACTCTCATCTAAGAAGGAAGCTCATCAACAAGGGAATTGATCCAAATAACCATAAATTGATTACTCACAAATTTCACAACCAAACAATAATGTCTCCCATGGCTcaaattattgataatattgATCAGCCAAAAATTAATGGAGAtcagaaaataattattattaataataataattatgaagaaCAAGTTTCAGATGGTGCAAGTACTGGCTTGGAAGATGAATCCTCCTATGGCTTGCCTGATTTAAACCTTGATCTCTCAATCAGCATTCCTAATTCCTCAAGCCAGATtcttcaccatcatcatcatcaagaagaagaagaagaagacaataaTCAAGTTCATCAAAACcctaatattcattttgcttcttcatcttcaaccCTACTTCTGTTTCAGTAG 726 0.3058 MRKPCCEKQEMNKGAWSKQEDQKLIDYINKNGEGCWRALPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINKGIDPNNHKLITHKFHNQTIMSPMAQIIDNIDQPKINGDQKIIIINNNNYEEQVSDGASTGLEDESSYGLPDLNLDLSISIPNSSSQILHHHHHQEEEEEDNNQVHQNPNIHFASSSSTLLLFQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2662 241 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Sto6g2662 241 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Sto6g2662 241 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Sto6g2662 241 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Sto6g2662 241 PANTHER MYB TRANSCRIPTION FACTOR 2 240 - -
Sto6g2662 241 MobiDBLite consensus disorder prediction 206 222 - -
Sto6g2662 241 CDD SANT 68 111 IPR001005 -
Sto6g2662 241 CDD SANT 15 60 IPR001005 -
Sto6g2662 241 MobiDBLite consensus disorder prediction 204 228 - -
Sto6g2662 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 240 - -
Sto6g2662 241 Gene3D - 68 137 - -
Sto6g2662 241 SMART sant 12 62 IPR001005 -
Sto6g2662 241 SMART sant 65 113 IPR001005 -
Sto6g2662 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Sto6g2662 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Sto6g2662 241 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Sto6g2662 241 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2662 Sto-Chr6 33740712 33743908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2662 2 208 MYB Transcription Factor Family AT4G38620 55.556 7.54e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g2662 Myb_DNA-binding 1.3e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2662 6 33740712 33743908 Sto6g2662 6 33740712 33743908 ECH