Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2643 ATGGACGATGAAGTTGTTCAGCGCGTCTTCCATGAAGGAGGCCGCGATTACTACCAACAACAAACTTCcacttcctcctcttcctcctccatcCTTCAATCTCTCCCTCTTCACGTGTCTTTTGATCATGGCTATTATTTGTTGGTAAAATCTATCCAAGAACTTCGAGAAAAAAAAGAGGGTCTTGTTACAGTTGGCATTGGTGGTCCTAGTGGTTCTGGTAAAACAAGCTTAGCAGAGAAGGTGGCATCTGTTATTGGTTGTATTGTAATTTCAATGGAGAATTATCGGGATGGAGTCGACGAAGGGAATGATTTAGATTTTATAGACTTCAATACCCTGGTGAAGAATCTCGAGGATTTGACAAAAGGTGATGATACACTAATTCCAGTGTTTGACTATCAACAAAAGAGACGTGTTGGATATAAAGCAATAAAGAGTGCTTCATCAGGGGTGGTAATAGTTGATGGTTCATATGCTCTGCATGCAAAATTGCGGTCTTTGCTAGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGATATTGGAGATTCTTGTTCACTGGATCACCTTATTGACAGTATTTTCCCATTGTTTAGAAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTTAGAGAAGCCATCTACAAGGTGAAATGCAGAAGTGAGTCTCCAGATGGAGGCATTGGTTCTGCCTTTCAACAAGATGAAGCCCAAACAGACAATTTTATAGAGATGTACCTTAGACCTCCCTCGGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAGGTGCGGCAGTCTGGAATTAGATATTATCTATCACTTGGTGACCAGAGGATAGTTGACAAAAATTTCATTATCAGGCCTAAAGCTGAGTTTGAGGTTGGGCGAATGACATTGGGGGGATTGTTGGCTCTAGGGTACACTGTTGTGGTTAGTTATAAACGTGCATCTACAACAGTCAGTACTGGCAATGTTTCGATGTCTTTTGAAACCATTGATGCTCTTGGTGAGACATACATGGTCTTGAGAGGAACAAATAGGAAAACAGTTGGAACAGAAGCATTAAAGATGGGTGTAAGTAGCCCTTGGATCACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTTAGTACACCACCACTTGTGTCTAACACAACTATGCCTAGTAATCAAGAAAGAGCAATCATTGCACCAAAGCCAATCCGAGTTACTCCTGACCTTGTAACTGGGCTTGAGGATTTATCTCAGCCATGGACTCGATCCCCTAGAAAATCTAAAATGGAACCTGTTGTAGCAACTTGGCATTTCATATCTTCAGATTCTTCTCAACCTGATAGCTCAGTACCAGCAACCACAGATCCTTCATCTTTCAGGGATTCCGTGAGGCTTGCCCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCTGTCCAAGCAATACAAGCTTTATTGGAGAATAAAGGAGTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGATCTGGAAAGACTAGTTTGGCCCATAAAATGGCAAATATCATTGGTTGTGAAGTAGTATCTCTAGAAAGCTATTACAAACGAGTAAAGGATTTTAAATATGATAACTTCAGCTCACTTGACCTGTCTTTGTTGTCAAAGAATATTAATGACATAAGAAATGTTCGAAGAACAAAAGTGCCTATATTTGACTTGGAAAGTGGAGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGGGTTTATGCTTTGCATCCTGATATTCGAATATCTCTGGACTTGTGGATTGCAGTTGTAGGAGGCGTTCATTCACATTTGATTTCTCGAGTTCAAAGGGATAAGAGTAGAGTAGGATATTTTATGTCCCAAAATGAGATTATGATGACAGTGTTTCCCATGTTCCAGCAGCACATTGAACCACATCTTGTTCATGCACATCTTAAGATAAGAAATGATTTTGACCCTGTCCTTTCCCCTGAGAGTTCATTGTTTGTATTGAAGAGTAACAAGAAAGTAGCGTATCAAGATATTCTTACGATTCTTGATCCAGCAAAATTTTGCAGTTCTGTTCAGAAGTTCattgatatatatttaaagCTTCCTGGGACCCCGTCAAATGGACAGTTGACAGAGGGAGATTGTATACGAGTCAGAATATGTGAAGGGAAATTTGCTTTGCTGATCCGTGAGCCAATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATAAGTGTTAGTACAGTTGCTGGTCTTCTTAATCTTGGGTATCAGGCAGTAGCTTATATTGAAGCATCTGCATTCATCTACCAGGATGGAAAGATTCTAATTGAGGTTGACCATCTACAAGATGTCCCAAGTCCATACATTCAAATTAAGGGTGTTGATAAAGATGCTGTGTCAGCAGCGGGTTCTATGCTTAAATTGGATGGTTCATATACTACTAAAAGTTATCTTCAAATAATTTTGGAACGACTACCAGCACTAGAAAGAACATTCGGCGGGATTCACTCTCAGCAGTCAGCAAGGCTGCAAGAAATTGTTGAGTTTATTCAATCCCAGGTAGCATTTGCTTTCCCATTAGTCTCATCCCCTTTTGCATAA 2727 0.3953 MDDEVVQRVFHEGGRDYYQQQTSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCIVISMENYRDGVDEGNDLDFIDFNTLVKNLEDLTKGDDTLIPVFDYQQKRRVGYKAIKSASSGVVIVDGSYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDHLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPDGGIGSAFQQDEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVSTGNVSMSFETIDALGETYMVLRGTNRKTVGTEALKMGVSSPWITKSYLEMILERKGVPRLSTPPLVSNTTMPSNQERAIIAPKPIRVTPDLVTGLEDLSQPWTRSPRKSKMEPVVATWHFISSDSSQPDSSVPATTDPSSFRDSVRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKRVKDFKYDNFSSLDLSLLSKNINDIRNVRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGYFMSQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILTILDPAKFCSSVQKFIDIYLKLPGTPSNGQLTEGDCIRVRICEGKFALLIREPIREGNFIIQPKVDFDISVSTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPSPYIQIKGVDKDAVSAAGSMLKLDGSYTTKSYLQIILERLPALERTFGGIHSQQSARLQEIVEFIQSQVAFAFPLVSSPFA 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2643 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 175 IPR027417 -
Sto6g2643 908 MobiDBLite consensus disorder prediction 465 485 - -
Sto6g2643 908 CDD UMPK_like 522 690 - -
Sto6g2643 908 Pfam Phosphoribulokinase / Uridine kinase family 522 687 IPR006083 GO:0005524|GO:0016301
Sto6g2643 908 Pfam Phosphoribulokinase / Uridine kinase family 109 223 IPR006083 GO:0005524|GO:0016301
Sto6g2643 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 690 IPR027417 -
Sto6g2643 908 SUPERFAMILY CYTH-like phosphatases 728 862 IPR033469 -
Sto6g2643 908 PRINTS Uridine kinase signature 520 537 - -
Sto6g2643 908 PRINTS Uridine kinase signature 547 558 - -
Sto6g2643 908 PRINTS Uridine kinase signature 641 651 - -
Sto6g2643 908 MobiDBLite consensus disorder prediction 465 486 - -
Sto6g2643 908 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 419 - -
Sto6g2643 908 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 607 892 - -
Sto6g2643 908 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 473 607 - -
Sto6g2643 908 Gene3D - 63 242 IPR027417 -
Sto6g2643 908 SMART AAA_5 519 663 IPR003593 -
Sto6g2643 908 SMART AAA_5 61 211 IPR003593 -
Sto6g2643 908 PANTHER URIDINE KINASE 607 892 - -
Sto6g2643 908 PANTHER URIDINE KINASE 2 419 - -
Sto6g2643 908 PANTHER URIDINE KINASE 473 607 - -
Sto6g2643 908 Gene3D - 519 696 IPR027417 -
Sto6g2643 908 CDD UMPK_like 64 226 - -
Sto6g2643 908 Gene3D - 706 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2643 Sto-Chr6 33486936 33501991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2643 515 678 PRT Gene Family AT1G55810 25.281 3.18e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2643 6 33486936 33501991 Sto3g1668 3 12740486 12748579 CCT
Sto6g2643 6 33486936 33501991 Sto6g2643 6 33486936 33501991 ECH