Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1177 ATGGCTTTTGCTCAGTTTATCCACATGCAGGTGGGAGCTATGGAAGGGATGAAGAATAATAATGGAGGAAATTATAATGATAATTCATGCACAAATttaaaaggaggaggaggagtagTAGTGGGGATAGAGAAGAATAAGCAAGTGGGAAGTAGGCCACAACAAGAGCAATTGAATTGCCCAAGATGCAATTCTAGCAACACAAAATTCTGTTACTACAACAATTATAGCCTCACACAACCTAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACTGAAGGTGGGTCCCTCAGGAATGTCCCTGTTGGAGGAGGTTCTAGAAAGCACAAGAAGCCTctcatctcttcttcttcttcttcttcaaagctTAATCTTCCTGACTTgaatccaccaccaccaccaagtactactctttcttcttcttcttctcctcctcctcaaaaccctaaaatgtTAATGCAAGGAGGCCAAGATCTTAATCTGGCTTTCCCACCACCTATGATGGAGAAGTATGATCATCATCATGGTGTAAtgggaattggaattggaattggattaagcacttcttcttcttcatcttctaatTCTTCTTCTGCTTTGGAGCTACTAAGGGCAGGCATGGTTAATAATTCTAGGgttttgaataataataataataataatggtcaTCCAATATTGATGATGCCAAACTCTAATGGTAATTATAATGCATCATCACTTTTCCCATCTGGGTTTACTTATAATCATCAATATCCCATGCAAGAAGTTAAACCAACAAGTAGCCTTGGGTTTTCAGTAATTGATCATCCTCATCCTCAAGCTCAAGCTCAACTTGTTCATCATCATCAAGAGGATCATCATATTAGTGGGAGGCTTTTGTTTCCATTTGGAGATGTCAAGCAGAATATTCCACCAGAAACTACTCATCATCATGAGGTGGAACAAAATAAAGAACAAGGGAATATTAATTCAGCATCAACTGGGTTTTGGAATGGAATGATTGGTGAAGGATCATggtga 1023 0.3128 MAFAQFIHMQVGAMEGMKNNNGGNYNDNSCTNLKGGGGVVVGIEKNKQVGSRPQQEQLNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKHKKPLISSSSSSSKLNLPDLNPPPPPSTTLSSSSSPPPQNPKMLMQGGQDLNLAFPPPMMEKYDHHHGVMGIGIGIGLSTSSSSSSNSSSALELLRAGMVNNSRVLNNNNNNNGHPILMMPNSNGNYNASSLFPSGFTYNHQYPMQEVKPTSSLGFSVIDHPHPQAQAQLVHHHQEDHHISGRLLFPFGDVKQNIPPETTHHHEVEQNKEQGNINSASTGFWNGMIGEGSW 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1177 340 MobiDBLite consensus disorder prediction 127 141 - -
Sto6g1177 340 MobiDBLite consensus disorder prediction 319 334 - -
Sto6g1177 340 MobiDBLite consensus disorder prediction 99 160 - -
Sto6g1177 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 335 IPR045174 GO:0003700|GO:0006355
Sto6g1177 340 Pfam Dof domain, zinc finger 56 112 IPR003851 GO:0003677|GO:0006355
Sto6g1177 340 MobiDBLite consensus disorder prediction 112 126 - -
Sto6g1177 340 MobiDBLite consensus disorder prediction 312 340 - -
Sto6g1177 340 ProSitePatterns Zinc finger Dof-type signature. 60 96 IPR003851 GO:0003677|GO:0006355
Sto6g1177 340 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Sto6g1177 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 51 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1177 Sto-Chr6 11291066 11292538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1177 51 340 C2C2-Dof Transcription Factor Family AT3G61850 41.639 2.33e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto6g1177 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1177 - - gmx:778110 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1177 6 11291066 11292538 Sto9g2724 9 29119861 29121447 ECH
Sto6g1177 6 11291066 11292538 Sto5g1309 5 8937010 8938749 ECH
Sto6g1177 6 11291066 11292538 Sto6g1177 6 11291066 11292538 ECH
Sto6g1177 6 11291066 11292538 Sto1g0881 1 9535656 9549177 ECH