Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1309 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGTGGTTAaagtaccaccaccaccacctatgGTGGAATTATTAggttcaaataataataataatccaattcaaattccaattccaaaggctcatccaaatccaaatccaggaagtggtggtggtggtggtatgGTGGTAGAGAGAAAGGCAAGGCCTGAAAAAGATGAAGCATTGAAGTGTCCAAGGTGCAATTCTGGCAACACAAAATTCTGTTACTACAACAATTACAGTCTCTCCCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACTCAAGGTGGCTCTCTCAGAAACGTCCCTGTGGGAGGAGGTTCTAGGAAAAACAAGATAAGACCCTCTTCTTCTCCTAATTCTTCTACTACTACATCTAACTCCAGTAATCATAATCATTCTTCTTCAATCATCAAGAAGCATCTTCCAGAAGCTtctcctcatcatcatcatcatcacattaATCCACCCCCTCAAGATCTTAACTTGGCatacccaccaccaccatcacaacCCACAGGTTTTAATTTGATGGCTTCTTTGATGCCCAATATGacggtttcttcttcttcagtagATCATGGAAGCACCTTGATGTATAGTAGCAgtagtagtaataataataataattcaggtGGAGGTGGTGGCGGGTTTATTCCGTTGCAAGAGTTTAAGCCTAGTCTTCATCATCAAGGTCTTAACTTTAGTTTTGAAGGGTTtgataatagtaatagtaataaCAATGGTGGCTATGTGGGTGGCTTTCAAGGCATTCAATTAGGAGCTTCTGGTGGTGCTGCCAGGATCTTGTTTCCTATTGAGGATTTAAAGCATCTTTCAActccaaccaccaccaccactaccacTACTCCTCCTCCTACGATTCaagatcataataataataataataatgatagagGAGGAAGCCATCATCATGGGGATAATTCATCTGGGTTTTGGAGTGGCATGTTAGGAGCAGGAGGATCATGGTAG 1026 0.3109 MDTAQWAQGNIGVVKVPPPPPMVELLGSNNNNNPIQIPIPKAHPNPNPGSGGGGGMVVERKARPEKDEALKCPRCNSGNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGSLRNVPVGGGSRKNKIRPSSSPNSSTTTSNSSNHNHSSSIIKKHLPEASPHHHHHHINPPPQDLNLAYPPPPSQPTGFNLMASLMPNMTVSSSSVDHGSTLMYSSSSSNNNNNSGGGGGGFIPLQEFKPSLHHQGLNFSFEGFDNSNSNNNGGYVGGFQGIQLGASGGAARILFPIEDLKHLSTPTTTTTTTTPPPTIQDHNNNNNNDRGGSHHHGDNSSGFWSGMLGAGGSW 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1309 341 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Sto5g1309 341 MobiDBLite consensus disorder prediction 200 229 - -
Sto5g1309 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 336 IPR045174 GO:0003700|GO:0006355
Sto5g1309 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 46 336 - -
Sto5g1309 341 MobiDBLite consensus disorder prediction 200 226 - -
Sto5g1309 341 MobiDBLite consensus disorder prediction 108 181 - -
Sto5g1309 341 MobiDBLite consensus disorder prediction 122 147 - -
Sto5g1309 341 MobiDBLite consensus disorder prediction 291 314 - -
Sto5g1309 341 MobiDBLite consensus disorder prediction 291 341 - -
Sto5g1309 341 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Sto5g1309 341 Pfam Dof domain, zinc finger 68 123 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1309 Sto-Chr5 8937010 8938749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1309 1 341 C2C2-Dof Transcription Factor Family AT4G24060 38.903 3.97e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto5g1309 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1309 - - soe:110796492 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2724 9 29119861 29121447 Sto5g1309 5 8937010 8938749 ECH
Sto6g1177 6 11291066 11292538 Sto5g1309 5 8937010 8938749 ECH
Sto1g0881 1 9535656 9549177 Sto5g1309 5 8937010 8938749 ECH
Sto5g1309 5 8937010 8938749 Sto5g1309 5 8937010 8938749 ECH