Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1212 TTGTTCAAGCATAGGAGACCACGTCTCTCTCTTTCCAATTTCAACAGCAATGCCTCATGTTCCCTAAAACCTGCTGCAACACTACTCACACTTTTCATTAGGTGCGAGGTGCAGGATCATCAGGAGATGTTGCAATTGGGATCAGGTAAGGGAAGAGGAGGAAGATGGAAACCCGACCACGTGGAAGCCGCTCCCAACTGCCCCCGCTGTGCTTCCCCCAACACCAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCCAGATACTTCTGTAAAGCTTGCCGCCGCTACTGGACCAAAGGCGGCTTCCTCCGCAACATCCCCGTCGGCGGCGGATCCCGCAAATCCCGCCGCAATTCTTCTCACTCCACCAAgactcccactcccactcctGCCTCCCACCCGCCCATGAATCATCAATCTCAGGAAGAAGCTGCCTCTTATGATATTGACATGGCCCTCGTGTTCGCCAACTTCTTGGGTCAAGACAACAAGGATAATAATCAACTATCTTCCAATTCCAAGCTGTGTTTGTCGGAGTGCGAGGACGCACCCCAGCCGTCCGATCCCCTCCCTCTTCGTCCACAACAGGAATATTCGTGCAGTACTACTGCGGCGGCGGGGATTAGTGGAATTATTGATGAGCTGGAGTGGGAGGGATTGTTGGGTGATGATCACGAAGTGGTCCAAGATGTTTTGTGGTGTGAGTGTGATGCTACGACGACGTCCTCTTCCGTCACGTGGCAGCCACAGCCACCTCTGAATATGCAGGAGGATTTGGTGGACTaccccattcccattcccttcaaTTATGAGGATCCTCATTTACACATCACCGATGCCTCCGCCTGGACTTGGACTTCCTTTGACTTTTCCACTCTCCATTCTTCTCATTAA 900 0.4933 LFKHRRPRLSLSNFNSNASCSLKPAATLLTLFIRCEVQDHQEMLQLGSGKGRGGRWKPDHVEAAPNCPRCASPNTKFCYYNNYSLSQPRYFCKACRRYWTKGGFLRNIPVGGGSRKSRRNSSHSTKTPTPTPASHPPMNHQSQEEAASYDIDMALVFANFLGQDNKDNNQLSSNSKLCLSECEDAPQPSDPLPLRPQQEYSCSTTAAAGISGIIDELEWEGLLGDDHEVVQDVLWCECDATTTSSSVTWQPQPPLNMQEDLVDYPIPIPFNYEDPHLHITDASAWTWTSFDFSTLHSSH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1212 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 55 166 IPR045174 GO:0003700|GO:0006355
Sto5g1212 299 MobiDBLite consensus disorder prediction 109 145 - -
Sto5g1212 299 MobiDBLite consensus disorder prediction 114 129 - -
Sto5g1212 299 Pfam Dof domain, zinc finger 65 119 IPR003851 GO:0003677|GO:0006355
Sto5g1212 299 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Sto5g1212 299 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Sto5g1212 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 55 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1212 Sto-Chr5 8176690 8178345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1212 56 161 C2C2-Dof Transcription Factor Family AT3G52440 58.036 1.05e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto5g1212 zf-Dof 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1212 - - mtr:MTR_3g090430 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1212 5 8176690 8178345 Sto5g1212 5 8176690 8178345 ECH