Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1188 ATGGCTACGGAACTGAAGTCCGACGCCTTAATGGAGCAGATGAAGCAGCATCTCGCTACCGACGCCGGCAAAGAGGTCACCAAAAAGATTGCCCTTGTTTATCAGATTCATATTGCCCCTAAGAAAATTGGAGTCGATGAGGTCGTCTACACCGTTGATCTCAAGAAAGGGGAGGTCAAAAAAGGAGCATACGAAGGAGGGAAGCCTGATGCGACATTCTCATTTAAGGATGAGGATTTTGTGAAGGTTGCCTTGGGGAAAATGGACCCGCGGATTGCTTTTATGAGGTTTAATTTGATCTTTCGTTGGATTCTTGAATGTTTAGTTGTTCATTTTTTGAATTCAATGTTTTCTGGTGATCAACGGATTCAGGGGTGCGATGAAGATAAAGGGAAGTCTGAGTGCTGCCCAAAAGTTCACTCCAGATATCTTCCCAAAGCCTTCCAAGATggattCAATTGGGAATCAAGTAACAATGGAGGATGGTACAACTCCCTCAAGAACTACATTCCTGACCTAGCCAGTGCAGGAATCACCCACGTTTGGCTTCCTCCTCCCTCCCAATCTGTTTCTTCTCAAGCTTTCCACGCGAAGGGGATAAAATGCGTTGCCGATATAGTGATCAACCACAGAACCGCAGAGAGGCAGGACAGCAGAGGAATTTACTGCATCTTCGAAGGCGGAACTTCGGATTCACGCCTGGATTGGGGCCCGCACTTCATTTGCGGAGACGACAAAGAGTACTCCGACGGCACCGGGAATCCCGATAGCGGCGATCCCTACCAGCCGGCACCGGACATCGACCATCTCAATCCTCAAGTTCAGAGGTTTGACGGATGGCGATTTGACTTCGTCAGAGGGTATGCCCCTAATATCACAAAAATCTATATGCAACGAACCTCTCCGGATTTCGCGGTTGGGGAGAAATGGGATTCTCTCGCTTACGATCAGAATGGGAAGCCCGAGTATAACCAGGATGCTCACCGTCGTGCGTTGGCTGATTGGGTGGACGCCGGCGGCGGCGTTGTCACGGCGTTTGATTTTACGACGAAAGGGATTCTCCAAGCTGCGGTAGAAGGAGAATTGTGGAGGCTGAAGGATTCAAATGGGAAGCCTCCTGGAATGATTGGGATGAAGCCAGAGAATGCAGTGACCTTCATTGATAATCATGACACTGGTTCCACTCAGAATCAATGGCCTTTCCCATCTGATAAAGTCATCCAGGGATACGCTTACATTCTTACTCATCCCGGGACTCCTTCCATTTTCTACGATCATTTTGTGGAATGGGGGTTGAAGGAGCAGATAAGGAATCTGACTGCAATAAGGAGGAGGAATGGGATCAATGCGAGAAGTAGTGTGAACATATTGGCATCTGAAGGTGACTTGTACATGGCTGAGATTGATTACAAGGTCATAATGAAGATCGGGCCTAAGATGGATCTGGGAGGACTTGTTCCTTCAAATTTCAAACTTGCTACCTCTGGCCAAGATTATGCTGGATTCCAGTGGGCTTCCAAAGACACAGCAGGAGGATTTTACAACTACCTCAAAACCCAACTCCCTTTGATTGCCGATCCTCCTCCCTCTAATTCTCACGATGATGCTCCTCAACAGAATAAGATCGTCGTCAAGATTGGATCAAATGGAGATCTTAAGAATCTTCTTCCTCAAAATGCTGTGCTTGCTACTAGTGGACTCAACTATGCTGTGTGGGAACTCAACTGA 1728 0.4734 MATELKSDALMEQMKQHLATDAGKEVTKKIALVYQIHIAPKKIGVDEVVYTVDLKKGEVKKGAYEGGKPDATFSFKDEDFVKVALGKMDPRIAFMRFNLIFRWILECLVVHFLNSMFSGDQRIQGCDEDKGKSECCPKVHSRYLPKAFQDGFNWESSNNGGWYNSLKNYIPDLASAGITHVWLPPPSQSVSSQAFHAKGIKCVADIVINHRTAERQDSRGIYCIFEGGTSDSRLDWGPHFICGDDKEYSDGTGNPDSGDPYQPAPDIDHLNPQVQRFDGWRFDFVRGYAPNITKIYMQRTSPDFAVGEKWDSLAYDQNGKPEYNQDAHRRALADWVDAGGGVVTAFDFTTKGILQAAVEGELWRLKDSNGKPPGMIGMKPENAVTFIDNHDTGSTQNQWPFPSDKVIQGYAYILTHPGTPSIFYDHFVEWGLKEQIRNLTAIRRRNGINARSSVNILASEGDLYMAEIDYKVIMKIGPKMDLGGLVPSNFKLATSGQDYAGFQWASKDTAGGFYNYLKTQLPLIADPPPSNSHDDAPQQNKIVVKIGSNGDLKNLLPQNAVLATSGLNYAVWELN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1188 575 PRINTS Alpha-amylase signature 199 210 IPR006046 GO:0004556|GO:0005975|GO:0043169
Sto5g1188 575 PRINTS Alpha-amylase signature 277 288 IPR006046 GO:0004556|GO:0005975|GO:0043169
Sto5g1188 575 PRINTS Alpha-amylase signature 381 393 IPR006046 GO:0004556|GO:0005975|GO:0043169
Sto5g1188 575 CDD AmyAc_arch_bac_plant_AmyA 151 454 - -
Sto5g1188 575 Pfam Alpha-amylase C-terminal beta-sheet domain 445 500 IPR012850 GO:0004556|GO:0005509|GO:0005975
Sto5g1188 575 Gene3D - 2 99 IPR036527 -
Sto5g1188 575 SMART alpha-amyl_c2 444 504 IPR012850 GO:0004556|GO:0005509|GO:0005975
Sto5g1188 575 SMART alpha-amyl_c2 528 574 IPR012850 GO:0004556|GO:0005509|GO:0005975
Sto5g1188 575 Gene3D Glycosidases 145 193 - -
Sto5g1188 575 MobiDBLite consensus disorder prediction 245 268 - -
Sto5g1188 575 SUPERFAMILY SCP-like 1 96 IPR036527 -
Sto5g1188 575 SUPERFAMILY Glycosyl hydrolase domain 539 573 - -
Sto5g1188 575 SUPERFAMILY Glycosyl hydrolase domain 448 500 - -
Sto5g1188 575 SMART aamy 146 443 IPR006047 GO:0005975
Sto5g1188 575 Gene3D Glycosidases 194 447 - -
Sto5g1188 575 Pfam SCP-2 sterol transfer family 12 96 IPR003033 -
Sto5g1188 575 PANTHER ALPHA-AMYLASE 1 145 194 - -
Sto5g1188 575 PANTHER ALPHA-AMYLASE 1 539 573 - -
Sto5g1188 575 PANTHER ALPHA-AMYLASE 1 193 500 - -
Sto5g1188 575 PANTHER ALPHA-AMYLASE 145 194 - -
Sto5g1188 575 PANTHER ALPHA-AMYLASE 539 573 - -
Sto5g1188 575 PANTHER ALPHA-AMYLASE 193 500 - -
Sto5g1188 575 SUPERFAMILY (Trans)glycosidases 144 446 IPR017853 -
Sto5g1188 575 Gene3D - 448 503 IPR013780 -
Sto5g1188 575 Gene3D - 536 574 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1188 Sto-Chr5 8009751 8024349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1188 152 500 Glycoside Hydrolase AT4G25000 60.870 2.34e-161 465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1188 5 8009751 8024349 Sto5g1188 5 8009751 8024349 ECH