Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1183 ATGATTGTGAACATAGGGGCCATCATTGACTCCACTTCACGTGTGGGAAAGGAGCAGAAGACAGCTTTGGAAATGGCCATCCAAGATGTTAATCACTTAACTTGTTTTAAGCTTGTTTTGAACTACTTCAATGATCCGTATCACAACCATACTGATCTTGCACAGACCAAACAAGTGCAACTTATAATAGAAACCAAACTCAATGGAGCAACTTTGGTCCCAATCATGTCTCTCACACCAATTCAACTGGCTACCGATTTTACCCTTAACCTTCAGTGTATCGCAGGCATCGTTGAGCAATTTAGGTGGCGGAAGGTCACTGCAATCTACGAGCATAATCATGGCTTCTTCTCTAATTCAGACATCTTAACTCACTTATCTTATTATCTTCGAAGTGTTCATTCCGAGATTGATCACCACGTGGCTTTCCCTTCGTTGACTTCTCTGTTAGACCCAAAAGCCACCATAGAAGCAGAGCTCACGAGGCTGAAGAACAAAAGTAACAGAGTCTTCTTAGTCATACAGTCCTCCTTAGAGTTTTCCATTTTGCTGTTTGAGAGGGCAAAGGATATGGGGCTGATGGAAAAAGGCTCGGTGTGGATCATCGCAGATGACGTGGCTAGCCATCTTGATTCCTTGGATTCCTCTGTTACCTTCAACATGCAAGGCGTCGTGGGATGCAAGACCAACTTCGTGGAAATCAGCGATACATTCAAACGGTTTAAACTCGTGTTCCGAAGAAAGTTTGGATTAGAATACCCGGAAGAAGAAAACCCACACCCCAGTGTCTTCGCTCTTCGAGCCTATGACGCGATTTGGGTAGTTGCTCATGCTTTGAACAAATCACAAGGAAACATTTCCTCATTATCAGCACATATTATGGCCACGAATCTCGTGGGTCTTAGTGGAAAATTAAGCTTCAAAGATCGAAAACTAATGGAATTAGCACCGACCTATAAGGTAGTTAATGTTATTGGTAGAAGTTACAAAGAATTGGCATACTGGTCAGAAGCCTCTGGTTTGTCAGAGAACCTTGCAGTGTATTGGCCAGGAGGATCAGAAGCTATCCCAAAGGGTTGGGTTTATAGTAGTGAAGAAAAGCCTTTGAAGATAGGTTTTCCTGCTAAGGATCCATGCCCTCAGTTTGTGAACGTGAGCTACGATCTCAGACAGAGTAAAACTTACATCACTGGTTTCTCAATTAATGTCTTTAGAGCAGTTGTGAAGCACTTACCTTATCACTTACCCTATGAATTAGTTGCTTTCAATGGCACTTATGACGAATTAGTCGAGCAAGTGAATAAGAAGGTTCTTGATGCTGCTGTGGGAGATATACAAATAATAGATAATCGATATGCTAATGCGGAGTTTAGTCATCCGTACCTTGAATCTGGTATTTGGATGATAGCAAGAGTAAAGCCAGATAGGTCCAAAGAGACATGGATGTTCATGGATGCCTTCACAAAAGAAATGTGGCTATTAATGGCAATGATGCACATGTTAATAGGATTTGCTATATGGTTTATCGAAAGTGAGGACAATCCAGAACTCAGGGGATTCCGGGCCATGCTTTGGTTTTTTGTCACCATATTGTTCTTTGTAGACAgaGAGCCCGTGAGGAGTAACTTGGCCCGAATTGTGCTGGCACCTTGGTTATTTGCAATTCTCATAGTGTCGGCTTCTTTTACTGCGAGCTTGTCCTCGATGATGACGGTGTCTCAACTTGAACCTTCTGTCCCGGATGTACAGACATTGCTGAGGACAAATGCAGTGGTAGGTTGCAACAAGAAAACATTTCTGGTCGATTACTTGATTAAGGAACACAAATTCAAGGCTGAGAACATCAGGGGATTTGACTCCATCGCCGATTTCCCAAAAGCCTTTGAGAACAAAGAAATCAAAGCTGCCTTCACAATTTCCCCTCATGCTCGAgCATTCCCAAAAGGTTCGCCTATGGCATATGACATATCAAGGGCAGTTCTAAAAGCAATAGAAAGTGGAGAAGTGGAACGATTAGAAAGGGACATGCTATCCAACACGGATTGTGGAGTGTCAGAGTCAAACAGTAAGATACAAGACGAACAATTAGGCCCTCGTCCTTTCTTTGGCCTATTTTACATATCCGGAGGGATTGCCAGCTTGGCTTTTACAATCACATTTTTGGGTTTTGTGGGAAGGAATGTCCAGAATATTAGGAACTGGATACATAGGCGCATGAGAAGAAATAATGAGCAAACTAGTACCGTTACTATTGAGTTaccaacaataaataataacaatcatGAGTCATGA 2292 0.4197 MIVNIGAIIDSTSRVGKEQKTALEMAIQDVNHLTCFKLVLNYFNDPYHNHTDLAQTKQVQLIIETKLNGATLVPIMSLTPIQLATDFTLNLQCIAGIVEQFRWRKVTAIYEHNHGFFSNSDILTHLSYYLRSVHSEIDHHVAFPSLTSLLDPKATIEAELTRLKNKSNRVFLVIQSSLEFSILLFERAKDMGLMEKGSVWIIADDVASHLDSLDSSVTFNMQGVVGCKTNFVEISDTFKRFKLVFRRKFGLEYPEEENPHPSVFALRAYDAIWVVAHALNKSQGNISSLSAHIMATNLVGLSGKLSFKDRKLMELAPTYKVVNVIGRSYKELAYWSEASGLSENLAVYWPGGSEAIPKGWVYSSEEKPLKIGFPAKDPCPQFVNVSYDLRQSKTYITGFSINVFRAVVKHLPYHLPYELVAFNGTYDELVEQVNKKVLDAAVGDIQIIDNRYANAEFSHPYLESGIWMIARVKPDRSKETWMFMDAFTKEMWLLMAMMHMLIGFAIWFIESEDNPELRGFRAMLWFFVTILFFVDREPVRSNLARIVLAPWLFAILIVSASFTASLSSMMTVSQLEPSVPDVQTLLRTNAVVGCNKKTFLVDYLIKEHKFKAENIRGFDSIADFPKAFENKEIKAAFTISPHARAFPKGSPMAYDISRAVLKAIESGEVERLERDMLSNTDCGVSESNSKIQDEQLGPRPFFGLFYISGGIASLAFTITFLGFVGRNVQNIRNWIHRRMRRNNEQTSTVTIELPTINNNNHES 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1183 763 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 745 - -
Sto5g1183 763 SUPERFAMILY Periplasmic binding protein-like I 3 360 IPR028082 -
Sto5g1183 763 Pfam Ligand-gated ion channel 657 709 IPR001320 GO:0015276|GO:0016020
Sto5g1183 763 SMART GluR_14 370 679 IPR001320 GO:0015276|GO:0016020
Sto5g1183 763 SUPERFAMILY Periplasmic binding protein-like II 345 674 - -
Sto5g1183 763 Pfam Receptor family ligand binding region 81 325 IPR001828 -
Sto5g1183 763 Pfam Bacterial extracellular solute-binding proteins, family 3 392 656 IPR001638 -
Sto5g1183 763 Gene3D - 370 480 - -
Sto5g1183 763 Gene3D - 481 616 - -
Sto5g1183 763 Gene3D - 89 252 - -
Sto5g1183 763 PANTHER GLUTAMATE RECEPTOR 2 745 - -
Sto5g1183 763 Gene3D - 266 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1183 Sto-Chr5 7963295 7966023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1183 2 718 Ion Channels AT3G51480 28.963 1.49e-95 315