Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1177 ATGGGTCTGCTTCTAGACAACTGTGAGGGGATTTTGCTGTCCTTAGACTCTCACAAATCGGTGCCCGCTCCATTCCTCACCAAGACCTACCAACTGGTGGATGATCCCACCACCGACCACATTGTTTCATGGGGCGAAGACCACACCACCTTCGTCGTTTGGCGTCCTCCCGAGTTCGCAAGGGATCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTATGGTTTCAGGAAGATCGTGCCGGACAGATGGGAGTTCGCTAATGAGCTGTTCAAGAAGGGAGAGAAGCACTTGCTCTGCGAGATCCACAGAAGAAAGACGGCTCATCCACAGCATCAGCCGCAGCTACCACTCCTTCCTGGACTCAATTGCAGCAGCGTCGtccctccttctttctttcccttctcaACCTCCTCCGCCATGTCTCCCTCCACCGACTCCGACGACGTCCAACCACCCAATTGGTGTGACGAAACCTCCGTCTGTTCCGTCATTACCGGATGCGGACCTAATAAGTACAACAACGTTACCGCCAACGCCAACGCCAACTCCGTGAGTGCGCTGTCGGAGGACAACCAAAGACTGAGGCGAAGCAACAACATGCTCATGTCCGAGCTGGCACACATGAAGAAGCTCTACAACGACATCATCTACTTCGTTCAAAACCATGTGAAGCCCGTCCCTCCTCCCACCTCCACTTCTTCTTACGCTTCTTTGCTTCATCACCTCCCTTCTAATAATCATTCCTCCACCACCACTACTGCTTCCATAGTGCAAAGGCCAATGCACATGAACCACCTTTTgagttattataataataatcccACTTCCAATACTACCCCTCAATTACCTCAAACTAATCACAACACTACTTCAAAGACCTCCTCCGTTACCCTCGTGGAAGAGGTCAGCACCAACCGCTGCAATAATAATAACACCAAGCTTTTTGGCGTTTCCCTTCAATCCAAGAAGAGGCTGCACCCTGATTCTCATTCATCTGACATTCATAAAACTAGATTGGTCTTGGAAAAGGATGATCTTGGCTTGAATCTCATGCCTCCTTCCgcttattga 1101 0.4832 MGLLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDHTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAHPQHQPQLPLLPGLNCSSVVPPSFFPFSTSSAMSPSTDSDDVQPPNWCDETSVCSVITGCGPNKYNNVTANANANSVSALSEDNQRLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVPPPTSTSSYASLLHHLPSNNHSSTTTTASIVQRPMHMNHLLSYYNNNPTSNTTPQLPQTNHNTTSKTSSVTLVEEVSTNRCNNNNTKLFGVSLQSKKRLHPDSHSSDIHKTRLVLEKDDLGLNLMPPSAY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1177 366 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1177 366 Coils Coil 194 214 - -
Sto5g1177 366 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1177 366 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1177 366 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1177 366 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1177 366 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1177 366 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Sto5g1177 366 Gene3D - 17 116 IPR036388 -
Sto5g1177 366 PANTHER BNAC06G00310D PROTEIN 12 364 - -
Sto5g1177 366 MobiDBLite consensus disorder prediction 282 303 - -
Sto5g1177 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 364 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1177 Sto-Chr5 7902257 7903446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1177 1 361 HSF AT1G46264 52.493 4.15e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto5g1177 HSF_DNA-bind 5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1177 5 7902257 7903446 Sto9g3547 9 34466890 34467943 CCT
Sto5g1177 5 7902257 7903446 Sto5g1177 5 7902257 7903446 ECH