Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1176 ATGTCGCAGCCGGTTGCCTTCTTTAACTCCGCAGATTTACAAGATCAGACTCAGCATCCTCCGTATGTTCCTCCCTTTCATGTTGTTGGGTTTGCACCTGGTCCATTTCCTCCTGGTGATGGCAGCGACGGTGGAGCTGATTTGCGGTGGAACTACGGCTTGGAACCTGAGAGGAAAAGACCAAAAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTCCATAGATTTCTTGCAAACCCGATCAGTGTCCACTGGATTGGGTTTGTCACTGGACAATGCCCGCATGGCTTCTACCGGAGACTCTGCTTTGTTATCTCTCATTGGTGACGATATTGAACGTGAGTTACAGCAGCAGGATGCAGAAATAGAAAGGTACCTCAGAATGCAGGGTGAACGTTTGCGGCAAAATATTTTAGAGAAGGTTCAGGCAACACAGCTTCAGAGTATATCACTTGTCGAGGACAAGGTCCTACAGAAACTGCAGGAGAAACAAGCAGAGGTTGAAAGCATTAATAAGCGGAATATGGAACTTGAAGAACGAATGGAGCAGTTGACTGTTGAAGCAGGTGCCTGGCAACAGCGTGCAAGATACAATGAAAACATGATTGCTGCTCTCAGACTGAATCTTCATCAAGTATATGTTCAAGGCCGAGATAGCAAAGAAGGATGTGGTGACAGCGAGGTAGATGATACCGCCTCGTGCTGCAATGGCCGTTCCATTGATTTTCACCTGCTCTCCAAGGAGAACAATGATATGAAGGAGATGATGATTTGCAAGGTATGCAGAGTCAATGAGGTGAGCATGCTTTTGTTACCATGTAAGCATCTGTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCTTTGTGTCAATCCTCTAAATTTATTGGCATGGAAGTCTATATGTAA 921 0.4484 MSQPVAFFNSADLQDQTQHPPYVPPFHVVGFAPGPFPPGDGSDGGADLRWNYGLEPERKRPKEQDFLENNSQISSIDFLQTRSVSTGLGLSLDNARMASTGDSALLSLIGDDIERELQQQDAEIERYLRMQGERLRQNILEKVQATQLQSISLVEDKVLQKLQEKQAEVESINKRNMELEERMEQLTVEAGAWQQRARYNENMIAALRLNLHQVYVQGRDSKEGCGDSEVDDTASCCNGRSIDFHLLSKENNDMKEMMICKVCRVNEVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1176 306 PANTHER F2G19.2 1 306 - -
Sto5g1176 306 Pfam Zinc finger, C3HC4 type (RING finger) 259 296 - -
Sto5g1176 306 PIRSF SBP1_RNase_bind 1 306 IPR017066 -
Sto5g1176 306 Coils Coil 110 130 - -
Sto5g1176 306 ProSiteProfiles Zinc finger RING-type profile. 260 295 IPR001841 -
Sto5g1176 306 Coils Coil 155 196 - -
Sto5g1176 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 304 IPR013083 -
Sto5g1176 306 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 306 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1176 Sto-Chr5 7888488 7891029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1176 259 296 Miscellaneous Gene Families AT2G21380 50.000 2.80e-08 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1176 5 7888488 7891029 Sto5g1176 5 7888488 7891029 ECH