Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1171 ATGTCTTCCGATTCCGACGATTTCTCTACCTTCTTCACTCACCTCCTCCATGCCTCCCCCTCCTCTTGCGTCGCCTCCAGGCCAAAAACCTCACCCCCACACTGGCTCTCTCCGCCTGCGGGCACCACCGGTTTTTTCCGTCCTGGACCGGACCTCCCGCTCAAGAATGGAAACTCCCTTACTTCTTCGGATGCACTTGCTGGCTCTTCCTCTGCTTTCGATTTCTCTGATCCCTATGCTTACGTTTCCGCTTATCAGAAAGACGCTACTGGAAACGAGCTTTTTCCGAGTGGTGTTGACGATTCTGAGGATAATACCTCCTTCAAAGAACTTGGGATTTCGTCGGAGGATGGTCCCGCCGATTTCCTTTGTCCCGTCGAGAAGAATGCGGAGGCGTCAGACACAAAAGCAGTCCCAACGCGGAGTTCGTCGAAAAGGAGTAGAGCTGCTGAGGTCTTAATTGATGGACAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCATTACAGAACTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGCTAGACGAGGCAATCGAGTATTTGAAACAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTGTTTACCAGGACTGCAACCTACGTCACTGCCTCAGAGTGGGTTGAATTTTGAGGAGGCTAATGGATATCAGAATTCTACCTGCGGAATTGCCTCATCTGCAAATGCTGAATGCTTGGTGCAGCCAGATTTCAATTTTCCAAAGCATTGCAACATCTCAGATCAGCCTATGGTCATACCCTCAATGACAAGCATGGCCAATCCAGATACCTCATCTACTTTCAGGTTTCATGTTGGATTGTTTGACCCTTCAACATCATCCAAGGATGCACTCTGTGATGGCACACCACAGCAGCTGCATTTGGATACCACCAAGATTGAAAACAAACCGTCTTCTGATGTAGTAGAAACAGAGAAAACTTGTCAAAGTGCTGGCGATCTTGTACAACACTAG 1035 0.4705 MSSDSDDFSTFFTHLLHASPSSCVASRPKTSPPHWLSPPAGTTGFFRPGPDLPLKNGNSLTSSDALAGSSSAFDFSDPYAYVSAYQKDATGNELFPSGVDDSEDNTSFKELGISSEDGPADFLCPVEKNAEASDTKAVPTRSSSKRSRAAEVLIDGQRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMCLPGLQPTSLPQSGLNFEEANGYQNSTCGIASSANAECLVQPDFNFPKHCNISDQPMVIPSMTSMANPDTSSTFRFHVGLFDPSTSSKDALCDGTPQQLHLDTTKIENKPSSDVVETEKTCQSAGDLVQH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1171 344 MobiDBLite consensus disorder prediction 324 344 - -
Sto5g1171 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 223 IPR036638 GO:0046983
Sto5g1171 344 MobiDBLite consensus disorder prediction 329 344 - -
Sto5g1171 344 MobiDBLite consensus disorder prediction 21 57 - -
Sto5g1171 344 Pfam Helix-loop-helix DNA-binding domain 157 197 IPR011598 GO:0046983
Sto5g1171 344 CDD bHLH_AtPIF_like 148 209 - -
Sto5g1171 344 SMART finulus 153 202 IPR011598 GO:0046983
Sto5g1171 344 Gene3D - 143 212 IPR036638 GO:0046983
Sto5g1171 344 PANTHER TRANSCRIPTION FACTOR SPATULA 72 319 - -
Sto5g1171 344 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 72 319 IPR031066 -
Sto5g1171 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1171 Sto-Chr5 7866899 7869288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1171 148 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.412 2.64e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g1171 HLH 4.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1171 5 7866899 7869288 Sto5g1171 5 7866899 7869288 ECH