Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1170 ATGCAAGGTCAGAGGGGTACACTTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGATCCACGTCAAGTAATGCTTCTGTGGATCAGCAGATTTGCTGGAACAATATGCGGAATCCTGCAGATAACGATATACCTGAGTATTTACTTCCTCCGGGTGATATTAACCCATCATATTTGAATTCTGTGAACCATGAATGGCAAAACTCAAGTGGATGGAGCTTGGGTGAGCCAAGCTCTGGTAATACCCAGAGCGAGATGAACAATAATCAGCAGAAAAGAGAACTTGGATGGTCATCTCAAATTAGTGCTGGTGCTGTAGCTGGTCCAAGATTAGAAGGAAGGCACTTCGAACCAACTATTGTTCTTTCAGCAGACAATGCCAGTTCAAGTCCTATGTATATGCATGGCTCCAATTCTCATTTGTTGTCCCCAAATCTGAACTTAAATGCAGGTTTGGTGGATGGTGGTAGTGATAACAGTCAGCATTTGGAGCTCCCCAACTTGCACAAGTCTGCAAATGAGCGTATTCAACCAAGTATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGAAATAACAGCTTCATGGTAGAAGGCACTGATGGTCGGTCAGGTTGTTCTCTGGATGCTCGCCGAGTGTCTTGTAAACGAAAGGCTATTGAAGGAAATGTTGGACCGTCTTCAGACAGTGGAAGTTCTAGTTACAGTCAGCATACAGAAAGTAGCACTTGGCCCACTCTTCCTACTCAGGATAATTCTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAACAGTTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCTCTGAAAGCCTTCCTGATTCAAATGTTGCAGGAAGCACAGAAAGCTTTCACAGGAATTTCCGTTTGAGGATAAATCCTTCAAGCCAACAAGACACTGCTCCTCCCCCTGCATTCCCTAATGGGAGTGTGATTAGGCATTCTAGCATTTCATCCTCTCCCATGTCACACAGGTTTTCTCCTGTTGATAATTCCCTGGACTTGAGGGCAGCACCAGCTGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTAATCCATGTTCCTGCTTTACCAAGGAATATGCAATCAATTAGATGGAATGGTGGTTCTAGCTCAAGAAACAGCCATTCATCAAGCTCAGTCATTTGTGCAGATAGAGATAATCTACCACATGAAGAAGCTAGCTCAAGAAGCATCTCTAGAAACCTTTTAGAACGCCCAGTGTTTGTACCTGCAACTGATTTAAGGAATCTTGCTCGAAATCCAACGAATAGAGCTTCAAGTAGTGCAAATTTAAGCGGGTTGGGAAATGCTGCTTCTTCATCACGGGCTGGATCAAATTCAGCTATCAATCAATCATCTTCCTCAACTTGGGTTTCTCGTCCTAATCCTCCGCATTATCCACGTAGATTATCTGAATATGTTCGTCGATCATTATTTTCTCCTCCATCTGAATCTGGTGGAAGTCCAAATCCAAGCAATAACTATTCTTCTTTGCGCTCTGGTCCTTCTACCCCATCTGAAGCAAGGGTGCCAGCATCTGGGGCTGGATCGTCTTTGTGGATGGAAAGGCAAGGTGATGAATTTGGAATCCCCTATTCATTACGAACTTTGGCTGCTGCCGGTGAAGGAAATAGTAGTAGACTAGTATCTGAGCTCCGCAATGTTTTGGGTCTCATGCGAAGGGGTGGAGGCCTGCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGCGTCTTGACGTCGATAACATGTCTTATGAGGAGTTGTTGGCCCTGGAAGAGCGCATTGGAAATGTTAGTACTGGACTGAGCGAGGATACCATaatgaaacttttgaaactGAAGAAGTATTCAGTAGAAACAGGATCTCAGCTTGAGGCAGAACCCTGCTGCGTCTGTCAGGAGGTGTATAATGACGGAGATGATATTGGAACACTTGATTGCGGGCATGATTACCATACTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGTTTGGCATCGTGA 2112 0.4403 MQGQRGTLGSLPETLEFDCGSTSSNASVDQQICWNNMRNPADNDIPEYLLPPGDINPSYLNSVNHEWQNSSGWSLGEPSSGNTQSEMNNNQQKRELGWSSQISAGAVAGPRLEGRHFEPTIVLSADNASSSPMYMHGSNSHLLSPNLNLNAGLVDGGSDNSQHLELPNLHKSANERIQPSIGSGPFLLPSGNNSFMVEGTDGRSGCSLDARRVSCKRKAIEGNVGPSSDSGSSSYSQHTESSTWPTLPTQDNSGSSLSRSASSEQLNARLGLGMGDEASESLPDSNVAGSTESFHRNFRLRINPSSQQDTAPPPAFPNGSVIRHSSISSSPMSHRFSPVDNSLDLRAAPAVDNIIPQSQPLVIHVPALPRNMQSIRWNGGSSSRNSHSSSSVICADRDNLPHEEASSRSISRNLLERPVFVPATDLRNLARNPTNRASSSANLSGLGNAASSSRAGSNSAINQSSSSTWVSRPNPPHYPRRLSEYVRRSLFSPPSESGGSPNPSNNYSSLRSGPSTPSEARVPASGAGSSLWMERQGDEFGIPYSLRTLAAAGEGNSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEDTIMKLLKLKKYSVETGSQLEAEPCCVCQEVYNDGDDIGTLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1170 703 MobiDBLite consensus disorder prediction 493 523 - -
Sto5g1170 703 MobiDBLite consensus disorder prediction 225 263 - -
Sto5g1170 703 CDD RING-H2_TTC3 655 697 - -
Sto5g1170 703 SMART ring_2 656 696 IPR001841 -
Sto5g1170 703 MobiDBLite consensus disorder prediction 219 263 - -
Sto5g1170 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 702 - -
Sto5g1170 703 MobiDBLite consensus disorder prediction 428 473 - -
Sto5g1170 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 700 IPR013083 -
Sto5g1170 703 MobiDBLite consensus disorder prediction 70 93 - -
Sto5g1170 703 MobiDBLite consensus disorder prediction 426 477 - -
Sto5g1170 703 ProSiteProfiles Zinc finger RING-type profile. 656 697 IPR001841 -
Sto5g1170 703 MobiDBLite consensus disorder prediction 303 336 - -
Sto5g1170 703 MobiDBLite consensus disorder prediction 321 336 - -
Sto5g1170 703 MobiDBLite consensus disorder prediction 376 409 - -
Sto5g1170 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 702 IPR045191 GO:0061630
Sto5g1170 703 MobiDBLite consensus disorder prediction 376 395 - -
Sto5g1170 703 MobiDBLite consensus disorder prediction 490 530 - -
Sto5g1170 703 Pfam Ring finger domain 656 697 IPR001841 -
Sto5g1170 703 SUPERFAMILY RING/U-box 642 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1170 Sto-Chr5 7860039 7863605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1170 1 703 C3H Transcription Factor Family AT2G15530 33.200 7.25e-86 283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1170 5 7860039 7863605 Sto9g3542 9 34435145 34438460 CCT
Sto5g1170 5 7860039 7863605 Sto2g0586 2 4958675 4961783 ECH
Sto5g1170 5 7860039 7863605 Sto10g0269 10 2168095 2173157 ECH
Sto5g1170 5 7860039 7863605 Sto5g1170 5 7860039 7863605 ECH