Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1168 ATGGGAAGCATGAAGGTGCATCAGTACGCACGTGGACTGTGGGAGCAcgaaccctctctctctcttgggtGCAAGCGCCTACGCCCTCTTGCTCCCAAACTCCCCAATAATTCCCCTCTAGCTCCCTTCGATCTCAAGACCTTCATCCGACCCGAAAGCGGACCCATCAAACTCGCCTCATCACACGACGTAACTAAGACCGATTCTTCAGCCGCCCagGTGGAAACGACGCATCCAGGAGGGACGCGATGGAATCCGACGCAAGAGCAGATAGGGATATTGGAGATGCTGTACAGAGGAGGGATGCGAACTCCCAATGCTCAGCAGATAGAGCAGATCACGGCTCAGCTGGGGAAGTACGGCAAGATCGAAGGCAAGAATGTGTTCTATTGGTTCCAAAATCACAAGGCACGTGAGAGGCAAAAGCAGAAGCGCAATACTACTCTTGCCCTTTCCCATCCTCCCACTTCCACATCAATTCTTCATAATTCCACTACTCCCATCATCACTACTGCTTTGGACTGGGACACAACAAGAAATCTCGATAAGGCAATTGACCACAAGGCTCTACATGAAACTTTTTCTGCTTTTGGAAACATCCTATCTTGCAAGATAACAACCGATGCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTTCAATTTGATAAAGAAGAATCTGCACAAAATgcaataaagaaattaaatggcATGCTGTTGAACTATAAACAGGCACAATTTTCACAAATGAGGCCTATTGCAATGGTTCCTTCAGTTGGCCGTCGAATCCCAATGTACCCTCCCGGTCTAGGACAACAATTTTTGTATGGGCAAGCTCCACCTGCCATCATTCCTCCACAATTATTGTTCTTATGGCTTCTTAGCTGTTTGCATTTCATTCCACTTTGCTTTACTGGCCAACTTTCTTGTTCTTGTGGTATGGTAGCTAATAATGCGGTTGATTCAAGTGTAGTCTATTCAACCTGCATCTCTTACATTACATCTATAGGTTATGTTGAAGTGTGTCATGAACTGCCTTTGTTGGATTTCCAATATGACATTAACTTTAGagggAGAGTGAGGATGAGTCCCCCGGCCGTCCAACGCATCTCTGAATGCTTCATCAAACCACCCCATGACTCCAACCACATATGCTATCTAAATCCAACCGACCTCGCCATGTTATCCGTACACTACATCCAGAAAGGCCTCCTCTTCCGCAATCCTCATCCCCATTTCATTCCCACTCTTTTGGACCGTCTTAAGCACTCCCTATCCCTCGCCCTCATCCACTTCTATCCCCTCGCCGGCCGCCTCCTTACCCGCCAAACCACACATCCTCCCTCCTACTCCATCTTCGTCGACTGTAACAACAGTGACGGTGTTCGATTCATCCATGCCACTCTAAACGCCACCGTTTCCCACATCCTCTCCCCTACCCGTGTCCCCCCACTTGTCCACTCATTCTTCGACCATCACATGGCTGTCAACCATGACGGTCACACCCTCCCTTTGTTGTCCGTTCAAGTCACCGAGTTGATAGACGGCGTTTTCATCGCCTGCTCTATGAACCACTCTCTCGCCGATGGAACCTCCTACTGGAAATTCTTCAACGCATGGTCTCAAATCTTTCAGGCCCaggcccaagcccaagcccaaattCGACCTTTTCACAACCGTTGGTTCCCAGAGGGTTGTGATGGTCCTCTGATTAATCTTCCCTTCAAGCACCACGAGGAGTTCGTGAGCAGATTCGAAGCACCTCCTCTGGTAGAGAGAATATTCCATTTCACAGCAGAATCCATCGCGAAGCTCAAAGCAAAGGCTAATCGCGATTCCAATAATAAGATATCGTCGTTTCAGTCCTTATCGGCTCTCGTGTGGAGGTGTATAACACGCGCGCGTCGTCTTCCGTATGAGCAGGTAACCAGATGCAGGCTGGCGGCTGAGAACAGATCAAGAATGGAGCCGCCACTGCCAAAGGACTACTTCGGGAATGCAATTAACGCGTTGAGCACCGAAACGACGTCGGCTGGGGAATTGCTGGAGCGTGAGTTTGGTTGGGCGGCGTGGAGGGTGCACGTGGCTGTGGCGAGCCATAGCGATAAGGCGGTGCGTGAGTGGGTGAAAGCGTGGTTGGAGAAGCCGACGGTGTATCGGTTGGATAAGTCATTTGATCGGTACAGTGTGATGATGGGGAGCTCTCCGAGATTCGACATGTATGGGAATGAGTTCGGGATGGGAAAAGCGGTGGGTGTTCTGAGTGGGTATGCTAACAAGTTTGATGGCAAAGTGACGTCGTATCCCGGTAGAGAAGGTGGGGGAAGCATAGATTTGGAAGTGTGTCTTCCGCCGGAGGCTATGGCGGCGCTTGAATCGGATGAGGAGTTCACGGTTGTTGTCTCTTTGTAG 2409 0.4832 MGSMKVHQYARGLWEHEPSLSLGCKRLRPLAPKLPNNSPLAPFDLKTFIRPESGPIKLASSHDVTKTDSSAAQVETTHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTTLALSHPPTSTSILHNSTTPIITTALDWDTTRNLDKAIDHKALHETFSAFGNILSCKITTDASGQSKGYGFVQFDKEESAQNAIKKLNGMLLNYKQAQFSQMRPIAMVPSVGRRIPMYPPGLGQQFLYGQAPPAIIPPQLLFLWLLSCLHFIPLCFTGQLSCSCGMVANNAVDSSVVYSTCISYITSIGYVEVCHELPLLDFQYDINFRGRVRMSPPAVQRISECFIKPPHDSNHICYLNPTDLAMLSVHYIQKGLLFRNPHPHFIPTLLDRLKHSLSLALIHFYPLAGRLLTRQTTHPPSYSIFVDCNNSDGVRFIHATLNATVSHILSPTRVPPLVHSFFDHHMAVNHDGHTLPLLSVQVTELIDGVFIACSMNHSLADGTSYWKFFNAWSQIFQAQAQAQAQIRPFHNRWFPEGCDGPLINLPFKHHEEFVSRFEAPPLVERIFHFTAESIAKLKAKANRDSNNKISSFQSLSALVWRCITRARRLPYEQVTRCRLAAENRSRMEPPLPKDYFGNAINALSTETTSAGELLEREFGWAAWRVHVAVASHSDKAVREWVKAWLEKPTVYRLDKSFDRYSVMMGSSPRFDMYGNEFGMGKAVGVLSGYANKFDGKVTSYPGREGGGSIDLEVCLPPEAMAALESDEEFTVVVSL 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1168 802 SUPERFAMILY Homeodomain-like 78 147 IPR009057 -
Sto5g1168 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 251 IPR000504 GO:0003723
Sto5g1168 802 ProSiteProfiles 'Homeobox' domain profile. 77 142 IPR001356 GO:0003677
Sto5g1168 802 SMART rrm1_1 179 247 IPR000504 GO:0003723
Sto5g1168 802 CDD RRM2_I_PABPs 180 243 IPR045305 -
Sto5g1168 802 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Sto5g1168 802 Gene3D - 81 149 - -
Sto5g1168 802 SUPERFAMILY RNA-binding domain, RBD 179 243 IPR035979 GO:0003676
Sto5g1168 802 CDD homeodomain 82 143 IPR001356 GO:0003677
Sto5g1168 802 Gene3D - 178 254 IPR012677 -
Sto5g1168 802 Gene3D - 368 568 IPR023213 -
Sto5g1168 802 Pfam Transferase family 369 796 - -
Sto5g1168 802 SMART HOX_1 79 146 IPR001356 GO:0003677
Sto5g1168 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 240 IPR000504 GO:0003723
Sto5g1168 802 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 361 798 - -
Sto5g1168 802 Gene3D - 575 792 IPR023213 -
Sto5g1168 802 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 361 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1168 Sto-Chr5 7833138 7843670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1168 4 176 Wox Gene Family AT1G46480 58.333 5.27e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sto5g1168 Transferase 1.6e-86 CL0149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1168 5 7833138 7843670 Sto2g0581 2 4895338 4924368 ECH
Sto5g1168 5 7833138 7843670 Sto10g0280 10 2249251 2253343 ECH
Sto5g1168 5 7833138 7843670 Sto5g1168 5 7833138 7843670 ECH