Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1160 ATGGCTTTGGAGCTTATATGGAGTTATGGAGACGATGCAAGTGTTGTGCAGGAAGCTGCTGCTGCAGGCATTCATAGTGTGGACAAACTCATGATCATGATTTCTCAACACCGGCAATGCCAAGTGGAGGAGAAGGAGACTTGTAGCTTCCGAGGGCCTTCAGAGTTGGAAACTGTTGCAAATGTGGCTATCAACAAATTCAAAAGGCTAATTTCTCTGCTGGATACCCCAACAACTGGTCATGCTCGTTTCAGAAAGGCTTCTTCTTCTCCCGCAATGCTTCCATCCATTCCTCTTCTCCAATTACAACAGACGATGAATTCTGAAACCAAAGCGTCTGAACTCCACCAAAACAAAACAGAGCAACCCTCTGCTTTTAAGGTGTATTGCCCCTCACCGATTAAACGCCTTCCCTCTTTCCCTCGGCTGCCTAAGCCTAACAAGGGAATTTTGGAAGCAAATGGTGGCATCCAATTTTCGAGTTCGCCCCCAGTTTCTACGCTAACGGGGGATACTGAAAGCTTGCAGGAGACCTGTCGTTCTTCGGGGTTTCAAAGGATTCATAATGGGTCCTACATGGGCAAGCCACCTTTGTGTTCTAGTTCTCTAAAGAGGAAGTGCAGTTCAATGGATGATGGTGCCATCAAATGCGGATCATCCGGTTCCGGTGGGCGTTGCCATTGCTCCAAGAAAAGGAAATCAAAGATAAAGAGAGTAATTAGAGTGCCAGCAATTAGCTCAAAGATGGCTGATATTCCCGCAGATGATTATTCCTGGAGAAAATACGGACAAAAGCCCATCAAGGGTTCTCCTTATCCcagGGGTTATTACAAGTGTAGCAGCGTCAGAGGATGCCCGGCACGGAAACACGTGGAGCGTGCTATGGATGATCCTAACATGCTCATTGTCACCTATGAAGCAGATCATAATCACTCGCGAGAGGTGGTGCTACTGCATGCCCACTTCTTTCTACGGCCTCTAGCCTCCAAAACTTCCAATAGGAAAAGCATCTTTGAGGAGCACACAAAGATGAATAGGATTGCTAAGAAATTTCTAGTTTCAACTTTGTACATCCTCATATTGTCCTTTCCTATCCTCACCTCACCCCTTGATGATGCTGATACAAATAGTAAGGCCTCAAGCCAAAGGTGCAACAATGAATTTAATCCAATTCCACTGACATCCCCATGCCATAAATCACCAAGCATTGAAGCAACTCCAACCTTACCTCTCCAAACAGATGATTTGGTATTTGCAGACCAAAGGCTTCAAGTTGTGTACTCCGTTATCCAAAAATTCAAGTCCATCATCACCTCTGATCCCCTAGGCGTCACCAAGTCATGGGTAGGCTCTGATATATGCAAATACAAAGGTTTCTACTGTGATAGTCCTCCAGACAACATCTCAGCCATTGCTTTGGCCTCCATTGATTTCAATGGATTCCAACTTGCTGCTCCTACCCTCGACGGCTTCATCGATCAGCTTCCTGATATTGCTCTCTTCCACGCAAATTCCAACAACTTCACAGGCACCATCTCCCCCAAAATCGCCAACCTCCCTTATCTCTACGAGCTTGATGTAAGCAACAACCAACTCTCTGGTCCATTTCCTATGTCTGTGTTGGGCATGGACACCCTCACATTCTTGGACATTCGCTTCAATTTCTTCTCTGGGGCTGTCCCGCCTCAGATATTCACCCAGAATCTCGACGCCCTCTTCATCAATAACAATGACTTCACCAAAACATTGCCCGACAACTTAGGTAGCACTCATATTCTGTATCTCACATTGGCCAACAATAAATTCATGGGTCCGATTCCTAGAAGCCTTCCCAAGGCTCTGTCCACTCTGTCTGAGGTTATTCTGCTTAACAACCAGCTCACAGGTTGTCTCCCTTACGAGATTGGGCTTCTTGAAGAGGCCACGGTGTTGGATGCTGGAAACAACCAGCTCACAGGCCCACTGCCTATGTCTTTGGGTTGCCTCTACAAGGTGGAGCTCCTCAACTTGGCTGGTAATTTACTGTATGGTATGGTGCCGGAAGTGGTGTGTGGGCTTCAGAATTTGGTGAATTTGTCACTTTCGGATAATTATTTTACCCATGTGGGACCCTTGTGTAGGAGCTTAATTGAGAGAGGGGTTCTTGATGTTAGCAACAATTGCATTCCTGATCTTCCTTTCCAGAGGCCCATTAGGAAGATGTGGGCTAAATTTGCTAATTTAATTACTGAGGCGGAAGAATACAAGATGCAAGGAGCAGGAATCGGTGGGAGGAAGAAAGgTTCGGACACGGAGATGATGGAAGCTGCGGATATGGCACTGCAGCAAGAGGTGGCGCCTGACTCCAGCCATGACGACGTCGTCCGGAATTTACTCACATTGGCTCGCCAGCTCGTCACTCAAGGCAAGCCTTCTCAGGCTCTTCAAGCGGTAATCTCTCCCACACATCCCCTTTCTTCACTTTCCTCTTAA 2472 0.4668 MALELIWSYGDDASVVQEAAAAGIHSVDKLMIMISQHRQCQVEEKETCSFRGPSELETVANVAINKFKRLISLLDTPTTGHARFRKASSSPAMLPSIPLLQLQQTMNSETKASELHQNKTEQPSAFKVYCPSPIKRLPSFPRLPKPNKGILEANGGIQFSSSPPVSTLTGDTESLQETCRSSGFQRIHNGSYMGKPPLCSSSLKRKCSSMDDGAIKCGSSGSGGRCHCSKKRKSKIKRVIRVPAISSKMADIPADDYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAMDDPNMLIVTYEADHNHSREVVLLHAHFFLRPLASKTSNRKSIFEEHTKMNRIAKKFLVSTLYILILSFPILTSPLDDADTNSKASSQRCNNEFNPIPLTSPCHKSPSIEATPTLPLQTDDLVFADQRLQVVYSVIQKFKSIITSDPLGVTKSWVGSDICKYKGFYCDSPPDNISAIALASIDFNGFQLAAPTLDGFIDQLPDIALFHANSNNFTGTISPKIANLPYLYELDVSNNQLSGPFPMSVLGMDTLTFLDIRFNFFSGAVPPQIFTQNLDALFINNNDFTKTLPDNLGSTHILYLTLANNKFMGPIPRSLPKALSTLSEVILLNNQLTGCLPYEIGLLEEATVLDAGNNQLTGPLPMSLGCLYKVELLNLAGNLLYGMVPEVVCGLQNLVNLSLSDNYFTHVGPLCRSLIERGVLDVSNNCIPDLPFQRPIRKMWAKFANLITEAEEYKMQGAGIGGRKKGSDTEMMEAADMALQQEVAPDSSHDDVVRNLLTLARQLVTQGKPSQALQAVISPTHPLSSLSS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1160 823 Gene3D WRKY domain 241 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto5g1160 823 Pfam Plant zinc cluster domain 204 251 IPR018872 -
Sto5g1160 823 Gene3D Ribonuclease Inhibitor 590 744 IPR032675 -
Sto5g1160 823 SMART WRKY_cls 253 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1160 823 Pfam WRKY DNA -binding domain 255 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1160 823 SUPERFAMILY L domain-like 428 722 - -
Sto5g1160 823 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 352 744 - -
Sto5g1160 823 PANTHER BNAA09G53810D PROTEIN 352 744 - -
Sto5g1160 823 SUPERFAMILY WRKY DNA-binding domain 251 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto5g1160 823 Gene3D Ribonuclease Inhibitor 427 589 IPR032675 -
Sto5g1160 823 ProSiteProfiles WRKY domain profile. 248 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1160 Sto-Chr5 7755162 7762630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1160 416 736 Leucine-rich Repeat extension Gene Families AT3G24480 44.237 3.83e-81 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto5g1160 WRKY 8.1e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1160 5 7755162 7762630 Sto5g1160 5 7755162 7762630 ECH