Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1150 ATGGCTTCCCCAAAGAACGACCTCGATCGTATTAAAGGTCCATGGAGTCCTGAGGAAGACGAAGCCTTACAAAGACTTGTTCAGAATTACGGCCCCAGAAACTGGTCTCTCATCAGCAAGTCCATTCCTGGTCGATCCGGCAAGTCCTGCCGTTTACGCTGGTGTAATCAGCTCTCTCCTGACGTCCAGCACAGGCCTTTCTCTCCCGACGAGGACGACACCATCATCAGAGCACACGCCAGGTTTGGCAACAAGTGGGCCACAATAGCTCGTCTCCTCCATGGCCGCACCGACAACGCCATCAAAAACCACTGGAATTCTACTCTCAAGAGAAAATGCTCCGCCATCGCCGATCCTTTCGATCCCGAATCCAATGAGCACCACCAGCCTCTCAAGAGTCTCTACTTGAATCCCAGTAGCCCATCCGGCTCCGACATGAGCGATACTAGTGATCCACCGACATCGCTAAGCCTATCGCTACCCGGATCCGATCCGTGCGAGGTCTTCAACCATGGATCCGGGTCGAATCAGCCCGCCTACCCCGCCCAGGTGCAGCCAACTCCACCATCGCCAGCTGTCGGGGGGTCATTCCAGCAATTGCTTATGCCAACTCAGAATAATCTACGATGTGATCCGGTTGGGCAGGAGAAACAATTCTTCAGCGACGAGTTTTTGGCGGTGATGCAAGAGATGGTGAAGAAAGAAGTGAGGAATTATATGTCAGGCGTGGAACCGAATGGTCTGTGTATGCACAGTGAAGCAATTAGAAACGCTGTGGTCAAGAGTATTGGGCTTAGCAGGGTCGAGTAG 810 0.5296 MASPKNDLDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPDVQHRPFSPDEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSAIADPFDPESNEHHQPLKSLYLNPSSPSGSDMSDTSDPPTSLSLSLPGSDPCEVFNHGSGSNQPAYPAQVQPTPPSPAVGGSFQQLLMPTQNNLRCDPVGQEKQFFSDEFLAVMQEMVKKEVRNYMSGVEPNGLCMHSEAIRNAVVKSIGLSRVE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1150 269 MobiDBLite consensus disorder prediction 120 190 - -
Sto5g1150 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Sto5g1150 269 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 239 - -
Sto5g1150 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Sto5g1150 269 PANTHER MYB PROTEIN-RELATED 9 239 - -
Sto5g1150 269 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Sto5g1150 269 CDD SANT 14 56 IPR001005 -
Sto5g1150 269 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Sto5g1150 269 Pfam Myb-like DNA-binding domain 15 72 - -
Sto5g1150 269 SMART sant 11 60 IPR001005 -
Sto5g1150 269 SMART sant 63 111 IPR001005 -
Sto5g1150 269 MobiDBLite consensus disorder prediction 130 161 - -
Sto5g1150 269 Gene3D - 11 63 - -
Sto5g1150 269 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Sto5g1150 269 CDD SANT 66 109 IPR001005 -
Sto5g1150 269 Gene3D - 65 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1150 Sto-Chr5 7678687 7679631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1150 1 269 MYB Transcription Factor Family AT4G37260 44.880 6.60e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g1150 Myb_DNA-bind_6 1.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1150 5 7678687 7679631 Sto2g0536 2 4602140 4603297 ECH
Sto5g1150 5 7678687 7679631 Sto10g0313 10 2486254 2487396 ECH
Sto5g1150 5 7678687 7679631 Sto5g1150 5 7678687 7679631 ECH