Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1122 ATGGCTCTGGAAGCTCTCAAATCTCCTACCACGGCTCCTCCATCTTTCCCCTTCGAGTTGGACTCTAATCTTAACTCCTTCGAGCCATGGGCTAAGCGCAAGCGCTCCAAGCGCACCACACGTCTCGATCATCCTTCTTGCACAGAGGACGAGTATCTCGCTCTATGCCTTATCATGTTGGCTCGCGGTGGCTCCGGTGATGTCTCGGACCGCCATAGCtctcctcaggttagtccacctcCTGCTGCATCTGAGTCGGTGCCGCTGTCGACGCCAGATCCGACTCTCAAGCTCAGTTATAAATGCTCTGTTTGCAACAAAGCCTTTTCTTCTTACCAAGCTCTTGGAGGACACAAGGCCAGTCATAGGAAACTCGCTGCAGGAGcagccgccgccgccgccggggAAGATCAATCCACCTCCTCCGCCGTCACGAGTACCTCTGCTAACACCACCACCACTGCATCCAATGGTGGCGGTAAAACTCACGAGTGTTCTATTTGCCACAAATCCTTTCCTACAGGGCAGGCCTTGGGCGGACACAAGCGCTGCCACTACGACGGTGGTGCTAGTGCCGGTGCCGGCGGTAGCAGCAATATCACCGCCTCGGAAGGCGTTGGATCCACTCATACCATCAGCCACAGCCACCGCGACTTCGATCTGAACCTCCCTGCTTTGCCGGACTTTTCAGCCAAGTTCTTCATGTCAGGGGACGACGAGGTCGAAAGCCCTTTGCCAGTGAAAAAGCCGCGTCTCTTGATGGCACCGAAAGTCGAAATTCCTCAAGATCATTGA 795 0.5157 MALEALKSPTTAPPSFPFELDSNLNSFEPWAKRKRSKRTTRLDHPSCTEDEYLALCLIMLARGGSGDVSDRHSSPQVSPPPAASESVPLSTPDPTLKLSYKCSVCNKAFSSYQALGGHKASHRKLAAGAAAAAAGEDQSTSSAVTSTSANTTTTASNGGGKTHECSICHKSFPTGQALGGHKRCHYDGGASAGAGGSSNITASEGVGSTHTISHSHRDFDLNLPALPDFSAKFFMSGDDEVESPLPVKKPRLLMAPKVEIPQDH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1122 264 MobiDBLite consensus disorder prediction 195 210 - -
Sto5g1122 264 MobiDBLite consensus disorder prediction 134 161 - -
Sto5g1122 264 PANTHER ZINC FINGER PROTEIN ZAT10 1 255 - -
Sto5g1122 264 MobiDBLite consensus disorder prediction 67 90 - -
Sto5g1122 264 SUPERFAMILY beta-beta-alpha zinc fingers 100 185 IPR036236 -
Sto5g1122 264 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Sto5g1122 264 MobiDBLite consensus disorder prediction 195 214 - -
Sto5g1122 264 MobiDBLite consensus disorder prediction 135 161 - -
Sto5g1122 264 Pfam C2H2-type zinc finger 163 187 - -
Sto5g1122 264 Pfam C2H2-type zinc finger 100 124 - -
Sto5g1122 264 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Sto5g1122 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Sto5g1122 264 SMART c2h2final6 100 122 IPR013087 -
Sto5g1122 264 SMART c2h2final6 163 185 IPR013087 -
Sto5g1122 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 185 IPR013087 -
Sto5g1122 264 Gene3D Classic Zinc Finger 98 185 - -
Sto5g1122 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 255 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1122 Sto-Chr5 7535603 7536397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1122 1 260 C2H2 Transcription Factor Family AT1G27730 49.237 3.31e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto5g1122 zf-C2H2_6 1e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1122 5 7535603 7536397 Sto2g0508 2 4358281 4361455 ECH
Sto5g1122 5 7535603 7536397 Sto5g1122 5 7535603 7536397 ECH