Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1117 ATGGAATCACTTGGAGGAGCCTTCCCTGATGGAGAAAGGGGTTGCTTTCGAGGAATGTTTGCCTCTGAAGAGTATGATTACTCATCACAATTTCTTGGCCCAAGCTCACTTCTGTTTGGGGAACATGATGCAATGATTATTGGAATAGAATCTGTATTTTGCTCTGCTCCTGAAGCTGGGGAGAATGAGAGTATGTTTTATTCTTCAGATGCTTTCAACTCAAATTTGCAGTATATTTCTCAAGAAAGTAGCTTCAGTAGTAATTGTAGTGGCGATACCTTCTTCATTGCCAATCCGGGTCATACAAACTACTATTTCAGTGATCCTGATCAAGCACTAGTAAATGATGGCTGCATGTCCATGAATGTCAGCATGATGGATGAGAAAAATGCTTGCTCCTTTGTCCCATCACTTGGGGACGATTTAGTGGAAGAGACTGTTAGCTTTAATGAAGGTGGAACAAGCGATGGATTGGAGAATTCTAAACCAAGCCAAGCAGAATTCACTGCTCTTCCTTCCAAACAGATGCACCCCAAAAGGAAGTTTGATGTGCCAGAGTTAGAGCCGGAGGCTTCAGCAGAAGATATTAATGCAAACATAAACTCATCTGAAAATCCGAAGAAAAAACCTCGTGTTCTAAAAGATGTGCAAAAGAGTACGAAGAATGCAAGGCCAAAGAAGAACCAAAAAGTTGCTGGAAATGGCTGTGAGGCAGAAGAGACTAATGCGGGATTAGCTGGACAAAGCTCTAGTAGTTACAGCTTGGAGGATGATAATGCTTCTCAGGAAAACAGTGGAGGAGCTACTTCTGAATCTAAATCACTAAATGGGAAGACAAGAGCCAGCAGGGGATCAGCAACAGATCCCCAAAGCCTATATGCAAGGaaaaggagagagagaataaATGAGCGACTTCGAATCCTTCAGAATCTTGTTCCAAACGGAACAAagGTTGATATAAGCACGATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATATGTGGATGTACGCACCAATTGCTTATAATGGAGTGGACATTGGATTGAATCTCAGCCGCAAGATTTCCCCACCTCTATAA 1116 0.4149 MESLGGAFPDGERGCFRGMFASEEYDYSSQFLGPSSLLFGEHDAMIIGIESVFCSAPEAGENESMFYSSDAFNSNLQYISQESSFSSNCSGDTFFIANPGHTNYYFSDPDQALVNDGCMSMNVSMMDEKNACSFVPSLGDDLVEETVSFNEGGTSDGLENSKPSQAEFTALPSKQMHPKRKFDVPELEPEASAEDINANINSSENPKKKPRVLKDVQKSTKNARPKKNQKVAGNGCEAEETNAGLAGQSSSSYSLEDDNASQENSGGATSESKSLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWMYAPIAYNGVDIGLNLSRKISPPL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1117 371 MobiDBLite consensus disorder prediction 207 222 - -
Sto5g1117 371 CDD bHLH_AtIND_like 286 348 - -
Sto5g1117 371 Pfam Helix-loop-helix DNA-binding domain 295 335 IPR011598 GO:0046983
Sto5g1117 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 351 IPR036638 GO:0046983
Sto5g1117 371 SMART finulus 291 340 IPR011598 GO:0046983
Sto5g1117 371 Gene3D - 287 343 IPR036638 GO:0046983
Sto5g1117 371 MobiDBLite consensus disorder prediction 174 188 - -
Sto5g1117 371 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 369 - -
Sto5g1117 371 MobiDBLite consensus disorder prediction 172 297 - -
Sto5g1117 371 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 369 - -
Sto5g1117 371 MobiDBLite consensus disorder prediction 243 289 - -
Sto5g1117 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1117 Sto-Chr5 7517042 7518608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1117 202 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 56.216 2.68e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g1117 HLH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1117 5 7517042 7518608 Sto5g1117 5 7517042 7518608 ECH