Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1113 ATGGGAACGGAGAGTCCGGCCAATTACACATACATGGGAAGAAGCATCAGCCAATTGAGTATCAATGATAATTCCTCCTCTGCTTTCAGCGATTGCAACAGTGACAGATCTGGTGAATTTCCCACCGCTTCTTCCCAAAGCCGCAAATTCCTGATTGCGTGTGCTTCCGACAATTCTGATGATTTCATTGCTCAGCTCGTAATCGACCTCCAATCCTCTTCGATTGACGAGCAAAAGCAAGCCGCTATGGAGATCAGACTTCTCGCCAAGAACAAGCCGGAAAACCGCCTCAAAATCGCCAACGCCGGCGCAATCAAGCCCTTGATTTCGCTCATGTCCTCATCAGACCTTCAGCTGCAGGAGTACGGCGTTACGGCGATTTTGAATCTCTCCCTATGCGACGAGAACAAGGAGCTTATAACCTCCTCGGGAGCGATAAAGCCTCTGGTTCGAGCCCTCAAGACAGGGACATCAACCACTAAAGAGAACGCGGCCTGTGCTCTGCTTCGTCTCTCTCAAATAGAAAAGAACAAGGTCGCAATTGGAAGGTCAGGAGCCATTCCTCTGCTAGTGAACCTTCTAGAGAGCGGCGGATTCCGCGGGAAGAAGGACGCCTCGACGGCGCTGTACTCCCTCTGTTCGGTGAAGGAGAACAAGATTAGGGCGGTGGAAGCGGGAATAATGAAGCCGTTAGTGGAATTAATGGCTGATTTTGGATCAAACATGGTGGATAAGTCGGCGTATGTGATGAGCGTTCTGGTATCGGTGCCGGAGGCGAGGACGGCGTTGGTGGACGAAGGAGGCATACCGGTGCTCGTGGAAATCATAGAAGTTGGGACCCACAGGCAGAAGGAAATAGCGGTGGCTATACTGTTACAGATTTGCGAGGACAGCGTGACGTACCGTACCATGGTGGCTCGCGAGGGAGCAATACCGCCGTTAGTGGCTCTGTCACAGTCCGGCGCTAATCGGTCTAAGCAAAAGGCGGAGACACTGATAGAGCTTCTACGGCAACCAAGGCCCGGCAACGCCGCTGCCCGTGCGTCGGAGGTCTAA 1056 0.5275 MGTESPANYTYMGRSISQLSINDNSSSAFSDCNSDRSGEFPTASSQSRKFLIACASDNSDDFIAQLVIDLQSSSIDEQKQAAMEIRLLAKNKPENRLKIANAGAIKPLISLMSSSDLQLQEYGVTAILNLSLCDENKELITSSGAIKPLVRALKTGTSTTKENAACALLRLSQIEKNKVAIGRSGAIPLLVNLLESGGFRGKKDASTALYSLCSVKENKIRAVEAGIMKPLVELMADFGSNMVDKSAYVMSVLVSVPEARTALVDEGGIPVLVEIIEVGTHRQKEIAVAILLQICEDSVTYRTMVAREGAIPPLVALSQSGANRSKQKAETLIELLRQPRPGNAAARASEV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1113 351 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Sto5g1113 351 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Sto5g1113 351 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Sto5g1113 351 PANTHER U BOX DOMAIN-CONTAINING 1 344 - -
Sto5g1113 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Sto5g1113 351 Gene3D - 40 199 IPR011989 -
Sto5g1113 351 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 344 - -
Sto5g1113 351 SMART arm_5 298 338 IPR000225 GO:0005515
Sto5g1113 351 SMART arm_5 174 214 IPR000225 GO:0005515
Sto5g1113 351 SMART arm_5 92 132 IPR000225 GO:0005515
Sto5g1113 351 SMART arm_5 215 255 IPR000225 GO:0005515
Sto5g1113 351 SMART arm_5 133 173 IPR000225 GO:0005515
Sto5g1113 351 SMART arm_5 256 296 IPR000225 GO:0005515
Sto5g1113 351 Gene3D - 203 350 IPR011989 -
Sto5g1113 351 SUPERFAMILY ARM repeat 60 334 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1113 Sto-Chr5 7495428 7497158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1113 63 345 U-box Gene Family AT2G23140 50.177 6.38e-86 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1113 5 7495428 7497158 Sto9g3498 9 34225635 34227030 CCT