Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1105 ATGAGCATTCTGTCCGGACTGGTTGCAGATTTGAACTGCAAGACGTATGTTTCTCTATCGCAGTTCTTTTCCAAGATGTTGTGTGCTTGCTCCGGGGAACAATTTAAGTTTGAAGAGCCCCCACAGTCACCGGAGTCCCTCGCAACGAGGGATTTCTCGGCTAGTGGACTCTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGACAATCAAGTGGACGAAGTTGAATCTACTCTCAAGGAAGCTCTCTCTTTAAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAAAGAGGGAATTTCGATGCTGCCCTTCAAGTATTTCAAGGAATTGACATCAGGGGATTGACTCCTAGGATGATTAGGGCTATTTCTGAGAGAAGAAAGCAAAGAAAACCACGTTCTAAGGCTGATCATGTGCTTCCCACTATGATGTCAATGCATTCCGTAAGCTTGCTTCTAGAGGCTATTCTTCTTAAAGCTAAATCATTGGAGGAACTTGGGCGCTACACTGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCTCTACCAAGTGGAATGCCTGAAGGCATTGGTGAAGATTGTAAATTGCAAGAGATGTTCCACAAAGCATTGGAGTTGCTTCCAAAGCTATGGACCCAGGCAGGCTCTCTAGATGAAGCTGTCTCTGATTATCGGCGGGCTCTGGTTAAGCCGTGGAATTTGGAGCCACAAAGGCTGGCCTCTGTGCAAAAAGATTTAGCAACCACACTGCTTTATGCTGGTGTTGAAATAAGCCTTCCCCCTCAGTTGCAAGCGTGGGGTCAAACAACACCCACGAGTAACATTGAAGAAGCTATACTATTGTTACTAATACTCATGAAGAAGATGGCACTTAAGGAAATTGAATGGGATGCCGAAATAATGGATCATCTTACATTTGCTCTATCAGTTAGTGGGATGTTTGAATCATTAGCAGATTTTGTGGAGCAGATCCTTCCAGGTATCTATTGTCGTGCTGACAGATGGTACTTTCTTGCTCTTTGTTATAGTGCTGCAGGACAGAATGAAGCAGCATTGAACCTTTTAAAGAAGGCTTGTGGTAACTCTGAAGCAAAGCATAGACCCCATTTCCCTTCCATTTTATTAGGAGCAAAACTGTGTTCTGAAGATCCTAACCACGCTCCTGATGGCATTAACTTTTCACGTAGAGTAATTGATCTAGCCAAGCTTCAATATGAGCATTTTCAGGGTCAAGGTCACAGATTTCTTGGTGTTTGCTATGGAGCTGCAGCTAGATTATCTGTGCTAGATTCTGAAAGAGTTGTATATCAAAGAGAATCTCTGAACTCTTTAAATCAGGCTGCTGTGATTGGAAATTGTGATCCAGAAGTGATATTCAGCCTTGGAATGGAATATGCAGTTCAAAGAAATCTGGATGCAGCTTATGAGAACGCAATGATGTACTCAGATATGGTTGTTGGTAGTTCTGGAAGAGGTTGGCAGCTATTAGCTCTCATAGTATCTGCACAGCAGCGGTTTACGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAGTCTGGGAGGATGGATCAGTTACAACTTTTAAGGTTGAAGGCCGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCTCTAATTCAAGCAAGAAAGGATCTTCACCTTGAATATAATGATCAAGTAAACGCATTAAGGCATGAGGCATTAACTGAAAGGAACTTGGAAATAGAATCTTGGCAGGATTTGGCAACCATTTATGCAGACCTTGGTTCCTTACTTGATGCAAAAACTTGTGTTGACAAAGCCCggttaatagattttttttctccCAGAAGTTGGCATATTACAGGAACATTGTTTGAAGCTCAATCATTATACAAGGAGGCCATTGTTTCTTTCTCAGTCTCATTATCAATAGAACCAGATTACGTTCCCAGCATCATTTCTACTGcagaaatgtttttaaaacttgatatgcaatcGCTTCCAATTGCAAGAAGCTTTCTAATGAACGCTTTACGATTAGAACCCACAAACCACGATGCGTGGTTCAACCTCGGATTGGTCTCAAAAATGGAAGGTTCTTTACAACAAGCAGCAGATTTCTTCCAAGCTGCATATGAGTTAAAGCTTTCAGCTCCAGTGCAAAGATTTGTTTGA 2217 0.4154 MSILSGLVADLNCKTYVSLSQFFSKMLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTGDWESKFDDNQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRGLTPRMIRAISERRKQRKPRSKADHVLPTMMSMHSVSLLLEAILLKAKSLEELGRYTEAAKECRIILDTVESALPSGMPEGIGEDCKLQEMFHKALELLPKLWTQAGSLDEAVSDYRRALVKPWNLEPQRLASVQKDLATTLLYAGVEISLPPQLQAWGQTTPTSNIEEAILLLLILMKKMALKEIEWDAEIMDHLTFALSVSGMFESLADFVEQILPGIYCRADRWYFLALCYSAAGQNEAALNLLKKACGNSEAKHRPHFPSILLGAKLCSEDPNHAPDGINFSRRVIDLAKLQYEHFQGQGHRFLGVCYGAAARLSVLDSERVVYQRESLNSLNQAAVIGNCDPEVIFSLGMEYAVQRNLDAAYENAMMYSDMVVGSSGRGWQLLALIVSAQQRFTDAETIVDFALDESGRMDQLQLLRLKAVLQIAQQQPKQAIETYRILLALIQARKDLHLEYNDQVNALRHEALTERNLEIESWQDLATIYADLGSLLDAKTCVDKARLIDFFSPRSWHITGTLFEAQSLYKEAIVSFSVSLSIEPDYVPSIISTAEMFLKLDMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKLSAPVQRFV 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1105 738 Coils Coil 81 101 - -
Sto5g1105 738 PANTHER PROTEIN NPG1 26 738 IPR043376 -
Sto5g1105 738 PANTHER PROTEIN NPGR1 26 738 - -
Sto5g1105 738 Gene3D Tetratricopeptide repeat domain 678 735 IPR011990 GO:0005515
Sto5g1105 738 Gene3D Tetratricopeptide repeat domain 65 266 IPR011990 GO:0005515
Sto5g1105 738 SUPERFAMILY TPR-like 506 729 IPR011990 GO:0005515
Sto5g1105 738 SUPERFAMILY TPR-like 90 487 IPR011990 GO:0005515
Sto5g1105 738 Gene3D Tetratricopeptide repeat domain 577 677 IPR011990 GO:0005515
Sto5g1105 738 ProSiteProfiles TPR repeat profile. 699 732 IPR019734 GO:0005515
Sto5g1105 738 Gene3D Tetratricopeptide repeat domain 282 572 IPR011990 GO:0005515
Sto5g1105 738 SMART tpr_5 699 732 IPR019734 GO:0005515
Sto5g1105 738 SMART tpr_5 342 375 IPR019734 GO:0005515
Sto5g1105 738 SMART tpr_5 629 662 IPR019734 GO:0005515
Sto5g1105 738 SMART tpr_5 158 191 IPR019734 GO:0005515
Sto5g1105 738 SMART tpr_5 536 569 IPR019734 GO:0005515
Sto5g1105 738 SMART tpr_5 595 628 IPR019734 GO:0005515
Sto5g1105 738 Pfam Tetratricopeptide repeat 342 370 IPR019734 GO:0005515
Sto5g1105 738 ProSiteProfiles TPR repeat profile. 629 662 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1105 Sto-Chr5 7426358 7429227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1105 26 738 Calmodulin-binding Proteins AT1G27460 61.367 0.0 883
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1105 5 7426358 7429227 Sto9g3494 9 34199958 34200940 CCT
Sto5g1105 5 7426358 7429227 Sto5g1105 5 7426358 7429227 ECH