Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto5g1103 | ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGCGATAAGAcagtttatcttgttgataagCTAACTGCGGATAATCGAGTGTACCACAAAGCTTGCTTCCGATGCCACCATTGCAAAGGAACCCTCaagCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGACCAACTCTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTTGAAGGGACACCAAAAATTGCTAAACCAGAAAAACACATTGATAATGAGAAACCTGCAGTAACCAAAGTGTCAAGCATGTTTGGTGGCACCAGAGAGAAGTGTGCTGGTTGTCAGAAAACTGTATATCCAACTGAGAAGGTTACTGTGAATGGAACTCCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGATGTGTAATCAGTCCTTCGAACTACATTGCGCACGACGGAAAGCTCTACTGCAAACATCACCATATGCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGATAAGAGTAATAATAATGCAACACATGACAGTGTCAATGGGGAAGAAGTTGCTGCCCAGGCATGA | 603 | 0.4212 | MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKHIDNEKPAVTKVSSMFGGTREKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHDGKLYCKHHHMQLIKEKGNLSQLEGDHDKSNNNATHDSVNGEEVAAQA | 200 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto5g1103 | 200 | MobiDBLite | consensus disorder prediction | 172 | 200 | - | - | |
| Sto5g1103 | 200 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Sto5g1103 | 200 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Sto5g1103 | 200 | PANTHER | LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE | 1 | 187 | - | - | |
| Sto5g1103 | 200 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Sto5g1103 | 200 | PANTHER | OS06G0237300 PROTEIN | 1 | 187 | IPR045268 | GO:0051015 | |
| Sto5g1103 | 200 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
| Sto5g1103 | 200 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Sto5g1103 | 200 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Sto5g1103 | 200 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Sto5g1103 | 200 | Gene3D | Cysteine Rich Protein | 105 | 174 | - | - | |
| Sto5g1103 | 200 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Sto5g1103 | 200 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Sto5g1103 | 200 | Pfam | LIM domain | 110 | 164 | IPR001781 | - | |
| Sto5g1103 | 200 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Sto5g1103 | 200 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
| Sto5g1103 | 200 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Sto5g1103 | 200 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto5g1103 | Sto-Chr5 | 7407335 | 7408702 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Sto5g1103 | LIM | 1.1e-12 | CL0167 |
Event-related genes