Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0404 ATGCCATTTCAGAAGCCCATTCTGCACgccattttccttttcttactacTTTTGCAGGCTTCAACCAATGTCAGCTCTAAATCTACGATCGAGCCTTGCGCCAACTCTGACTCCTGCAATGCCCTACTCGGCTACACTCTTTACACTGACCTAAAGGTCTCTGAGGTCGCTTCTCTCTTTCAAATCGACCCTATTGCTCTTCTCACCGCCAATGCCGTCGACATTTCCTACCCTGACGTAGAACACCACATTCTTCCCTCCCACCTCTTCCTCAAGATCCCCATTAACTGTTCCTGTGTGGACGGAATTCGTAAATCGGTGTCCACCCATTACAGAACTCGGCCCTCTGATTCTCTCTCATCCATTGCGGATTCAGTATATGGGGGATTGGTGTCTGCTGATCAGCTCAGGGAGGCCAACTCCATAGACGACCCTTCCGTACTGGATGTGGGTCAGGACCTCGTGGTGCCTCTTCCCTGCACTTGCTTCAATGGGACTGATAACTCTTTGCCTGCGATTTACCTGTCGTATGTGGTGCAGCCCATTGATTCTTTGGCTGCAATTGCGGCCAGGTATTCCACCACTCTTACTGATTTGATGGATGTCAATGCCATGGGGACTACGGCTATCAACGATGGTGATATTCTTGCAATTCCCATTCCGGCTTGCGCTTCAAATTTTCCAAACTATGCCGCTGATTATGGTTTGCTTGTCCCTAATGGAAGCTATGCCATTACAGCTAGTCACTGTATGCAGTGTAGCTGTGGACCACAAAATCTTAATTTGTACTGCATGCCTGCGTCTTTGGCTGTCTCTTGCTCTAGCATGCAATGTAAAAACAGCAGCCTTATGGTTGGGAATGTTACAGCGCAGCAGAGTAGTGCTGGCTGCAATGTTACTTCTTGCAGTTATGATGGTTTTGTTAATGGAACCATAGTTACATCGTTGTCCGCATCTCTTCAGCCTCGATGCCCAGGGCCGCAGCAATTTCCGGCACTGGTAGCTCCACCTACTACTGTTACCAGAATTTCCGAATTTTCTCCAGCACCATCACCCCAGTCAGATTTAGGCGGTCcaacaaaccccaaatcttCAGTGGTGCCTGCAACAGGGTCCTTTCCGGCCGGATTCACACCTGCAAATGGTCCCAGTAGTGGGTTGGCCTCTGGTGCTTCGGGTGCTAATTCTACACTGAACCCATTACCTGCTTTGACATCTacgcttttgtttttgtttgtcaaGTTGTTGATCTCTGTGGCGTTGTGA 1266 0.47 MPFQKPILHAIFLFLLLLQASTNVSSKSTIEPCANSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAVDISYPDVEHHILPSHLFLKIPINCSCVDGIRKSVSTHYRTRPSDSLSSIADSVYGGLVSADQLREANSIDDPSVLDVGQDLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDSLAAIAARYSTTLTDLMDVNAMGTTAINDGDILAIPIPACASNFPNYAADYGLLVPNGSYAITASHCMQCSCGPQNLNLYCMPASLAVSCSSMQCKNSSLMVGNVTAQQSSAGCNVTSCSYDGFVNGTIVTSLSASLQPRCPGPQQFPALVAPPTTVTRISEFSPAPSPQSDLGGPTNPKSSVVPATGSFPAGFTPANGPSSGLASGASGANSTLNPLPALTSTLLFLFVKLLISVAL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0404 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 409 - -
Sto5g0404 421 Gene3D LysM domain 166 227 IPR036779 -
Sto5g0404 421 MobiDBLite consensus disorder prediction 343 372 - -
Sto5g0404 421 CDD LysM 109 156 IPR018392 -
Sto5g0404 421 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Sto5g0404 421 SMART LysM_2 176 219 IPR018392 -
Sto5g0404 421 SMART LysM_2 110 157 IPR018392 -
Sto5g0404 421 CDD LysM 176 218 IPR018392 -
Sto5g0404 421 Pfam LysM domain 177 219 IPR018392 -
Sto5g0404 421 Pfam LysM domain 111 157 IPR018392 -
Sto5g0404 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 4 409 - -
Sto5g0404 421 SUPERFAMILY LysM domain 175 220 IPR036779 -
Sto5g0404 421 MobiDBLite consensus disorder prediction 343 368 - -
Sto5g0404 421 ProSiteProfiles LysM domain profile. 175 218 IPR018392 -
Sto5g0404 421 Gene3D LysM domain 103 164 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0404 Sto-Chr5 2521201 2523421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0404 4 420 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 64.218 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0404 - - gmx:100808966 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0404 5 2521201 2523421 Sto5g0404 5 2521201 2523421 ECH