Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0301 ATGCAATCTAACGGCTCTGATGATTCCCAACAACCCGAGAAAAATCAACGGCAACAGCAAACGCAGACGCCGCTGCCGCTGCCTCGCCAGTGGATGCCTATGCAGTATCCGGCGGCGGCTATGGTAATGCAGCATCACATGTTGCCACCTCATCATTACGCGCCGCCGCCACCGCAGCCCTATATTCCTTACCACCACCAGTACCAGCAGCTGCAGCACGTGCCTCACCCGCAGCACCATCAACAGGGATCCAACGGCGAGAACAAGACCATCTGGGTTGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCATCGCTGCTTCGCTTCCACGGGCGAGATTTCGTCCATTAAGGTGATTCGCAATAAGCAGACAGGGCTGTCAGAGGGTTATGGATTTGTGGAATTCTATTCGCATGGTACAGCAGAGAAAGTATTACAGAATTATGCTGGCACTCTGATGCCCAATACAGAGCAACCTTTTCGCCTAAACTGGGCAACATTTAGCACGGGAGATAAGCGTTCAGATAATGTTCCGGATCTTTCTATTTTTGTGGGAGACTTGGCTGCAGATGTTACTGATACCATGTTGCATGAAACTTTTGCTGGCAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGGCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCACAGGCTTTGACCGAAATGAATGGTGTTTATTGCTCTAGCAGGCCTATGCGTGTTGGTGCTGCTACTCCAAGGAAATCATCCGGCTATCCACAAGGCCATATGTCAAATGGCACATCCAACCAATCTGAAGCAGATTCAGCAAACACAACTATATTTGTTGGAGGGCTCGACCCTAATGCTACAGATGAAGATCTTAGGCAGCCATTCTCACAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGCTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAATGATTGTCAAGCAAACAGTTCGGCTTTCTTGGGGACGCAATCCAGCAAATAAGCAGTCAAGAGTGGATGTTGGGAGCCCCTGGAATGGGGGGTATTATGGAGGCCCTGTTTATGATGGTTATGGATATGCTTTGCCACCTCATCACGACCCAAGCATATACGCTGCAGCAGCTGCATATGGGGCTTACCCCATTTATGGAGGCCATCAACAGCAAGTAAGCTGA 1260 0.4786 MQSNGSDDSQQPEKNQRQQQTQTPLPLPRQWMPMQYPAAAMVMQHHMLPPHHYAPPPPQPYIPYHHQYQQLQHVPHPQHHQQGSNGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGTLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDTMLHETFAGRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQALTEMNGVYCSSRPMRVGAATPRKSSGYPQGHMSNGTSNQSEADSANTTIFVGGLDPNATDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIVKQTVRLSWGRNPANKQSRVDVGSPWNGGYYGGPVYDGYGYALPPHHDPSIYAAAAAYGAYPIYGGHQQQVS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0301 419 MobiDBLite consensus disorder prediction 258 282 - -
Sto5g0301 419 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 418 - -
Sto5g0301 419 MobiDBLite consensus disorder prediction 1 30 - -
Sto5g0301 419 Gene3D - 88 168 IPR012677 -
Sto5g0301 419 Gene3D - 170 273 IPR012677 -
Sto5g0301 419 MobiDBLite consensus disorder prediction 266 282 - -
Sto5g0301 419 CDD RRM3_NGR1_NAM8_like 286 357 - -
Sto5g0301 419 SUPERFAMILY RNA-binding domain, RBD 274 387 IPR035979 GO:0003676
Sto5g0301 419 SMART rrm1_1 183 257 IPR000504 GO:0003723
Sto5g0301 419 SMART rrm1_1 90 165 IPR000504 GO:0003723
Sto5g0301 419 SMART rrm1_1 288 355 IPR000504 GO:0003723
Sto5g0301 419 MobiDBLite consensus disorder prediction 1 28 - -
Sto5g0301 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 351 IPR000504 GO:0003723
Sto5g0301 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 253 IPR000504 GO:0003723
Sto5g0301 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Sto5g0301 419 SUPERFAMILY RNA-binding domain, RBD 55 170 IPR035979 GO:0003676
Sto5g0301 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Sto5g0301 419 CDD RRM2_SECp43_like 181 260 - -
Sto5g0301 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Sto5g0301 419 Gene3D - 274 368 IPR012677 -
Sto5g0301 419 CDD RRM1_SECp43_like 90 170 - -
Sto5g0301 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 418 - -
Sto5g0301 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 359 IPR000504 GO:0003723
Sto5g0301 419 SUPERFAMILY RNA-binding domain, RBD 165 276 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0301 Sto-Chr5 1796795 1799461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0301 91 367 Eukaryotic Initiation Factors Gene Family AT4G34110 30.035 9.83e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0301 5 1796795 1799461 Sto9g3577 9 34599799 34602897 CCT
Sto5g0301 5 1796795 1799461 Sto5g0301 5 1796795 1799461 ECH