Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0286 ATGGCATGCCAGGACTGTGAGGATAACTTCAATGTGAGAAGGCCTCACTTCTATGAGCTTTATTCCTCCACATCGAGCTCTGTGAGACTGAAAATTCCTGCTGGATTCATCTGTCACATGGAAGGTAGGACACCTGGATCAGTCTCATTAACAGGTCCTAGCGGAAATACCTGGCATGTTCAATTAATTAAGCAGGATGATGATTTATTCCTTCATCATGGATGGCCAACATTTTTAGAAGACCATAGTATAGAAAGTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACTTTCATTTCACTGTGCTAGTATTTGATCAAAGAGCGTGTGAGAAAGAAGCAGCATTTAATTCTGAATGCAGGCAAACTTATCGAGaccttaattatattaaagcaCAGAAAAGAGATAGGGAGGAGGATTCTTTGAATGTTGTTGCTGAAGGCTTGCTGAAAAAAATAAGAGGGAGCTCCGTCAAGAATCAGGAACTCAATATGAGTTCAGTTGATAAAGAATTATCTTTGCTTGAGGGAGTGAAACCGATTAGTATGTTCAGAGAAAAAGGAGAATCCTCCAACAAAAATGAGCAAGTTAGATACTCGGCTAGTGATATTGCCGTGCCTTCTCAAAAGGAATATAGCAAAGATGAAGAGGCTGCCATGCAGATTGGAAGTGGGAAGGAAGATGATCAATATATGCATAGTAGAATTTGTCTGTCGAAGTTATCACCACATGATGAGAAACGAGTAGCTCAGTTGTTTACTTCCTCATTCCCATTTTTTGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCGTATACTCTGAATATTCCTTATCAGTTTTCAATGGCTCATCTTCCAAACTGCAAGATAAAGATCGTCCTTCATAATATTAAAGGAGAACGGTGGACTGTTAATTCTGTACCAACAACGAGAGTACATACAAGTCACACTCTGTGTGGCGGGTGGATGGCTTTTGTTCGTGGCAATAACATCAACATCGGAGATATCTGCATTTTTGAGCTTGTGCATGAGTGTGAATTACGTGTCAGCATTGTTGGGGCTGGAAGAGATGAGATAGATTGCCAGGTAGGAAAACTAGCTTTTAGTAGGTCCCTTGCAGGACATTCTATCAATTCCCATAAAACTTCTCGGTATATGCCAATCAATGCCAAAGTCAATTCAAAATGCTTAGCAAAAGTCGATCTATCTGATAAAAAGTGGTCAAAGATGGGCCAGGATGCTATGTCTATTGATAAGAAGAAACCCGGTAGACCGTCAATGACTTCTACAAAGATGGGGATTTGCTCTCAGACAAAAGCTTCCCTTAATAAGTTGGGTGTTCAGAGGAGACATAGAACTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGCTGTTTGCACTCGATGAACAAAGAGTGGCTCAGGCTTTCACTTCCTCTTTTCctaattttgtaaaaatcatgaaaaaGTTCAATGTCAGCGGATCTTACACTTTGAAAATCCCATACCAGTTCTCTGCCGCACATCTCCCATCCTACAAAACGGAAGTTCTGCTTCGTAATATAAGAGGTGAGTGTTGGACCGTGAACTGTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTCGAACTGGTTGCTAAATGTGagatgcagGCACTTCCCAGAACTTTTTCAGATaatttgagaactaaattgCCTGATTGTGTGACTCTCAAAGGTCCTAGTGGTGCTATATGGAGTATTGGGTTGACAACTAGAGATGATACATTGTACTTCACGCATGGTTGGCAACAATTTGTGAAAGATCACTGTTTGGAAGAGAATGATCTTCTGGTCTTTAAGTACAATAATGAATCGCAGTTTGAAGTTTTAATATTTGACAGGGAAGGCTTCTGTGAGAAGGCTGGTTCTTATTTTGTCAGGAAATGTGAGCATACAAATAAGAGAAACCGAGATGACTGTAGGGAAGAAGTTAATATCCCTAACGGTCGTGCTGATTGTGCTTCACCTGAGAAATTTAAGCAGGGTGACAGTATCAGAGTGCCAGCAGTTGTCCCCTCTGAAACCAGTAGTAAAGAGACCTTTAATGCCGGTGCGGAATTTGTCTCCCCAGTTAGTGTGGCCGTTCCAACGAGAAGAGTGAAAGCCAGAGGATCTAAATCTAATGCACGTGGAGGAGTTAACTGGATTATTGaTGCTGAAACTCCATCTGCGggcaaaagcaaaacaaatgACACCGTATATACTTCAAACAGAAGGCCCGTcacagaagaagagaaaaacatTACCCTTCAATTGGCCCAGGAAGCATGTACCAGCGATGGGTTCTTCATAGTCATGCGGCCAACACATGTGTACAAGAGATTCTATGCGTCAATCCCTAGTAAGTGGATAACAGAACATCTCTCTCCATATTCTGAAGATGTGATATTACGCGTGGGAGAGAGAGAATGGCCAGCCAAGTTCAGCTTTGAACATGGACGTCGCACTGGAGGGCTTACTGGTGGATGGAAACATTTTGCGCTGGACAATAACCTAGAAGAATTTGATGTTTGTGTGATTCGTCTAGCCGATAAAACCATCAAGCCAATGGTCATGGAAGTGCAAATATTCAGAGTTGTTGAGGAAGTAACTGCTCTGTCTGGAGGAAAACAGGGAAGAAAGGCCATCCAAGCATAG 2757 0.407 MACQDCEDNFNVRRPHFYELYSSTSSSVRLKIPAGFICHMEGRTPGSVSLTGPSGNTWHVQLIKQDDDLFLHHGWPTFLEDHSIESGDLLVFRYEGHFHFTVLVFDQRACEKEAAFNSECRQTYRDLNYIKAQKRDREEDSLNVVAEGLLKKIRGSSVKNQELNMSSVDKELSLLEGVKPISMFREKGESSNKNEQVRYSASDIAVPSQKEYSKDEEAAMQIGSGKEDDQYMHSRICLSKLSPHDEKRVAQLFTSSFPFFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIVLHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRGNNINIGDICIFELVHECELRVSIVGAGRDEIDCQVGKLAFSRSLAGHSINSHKTSRYMPINAKVNSKCLAKVDLSDKKWSKMGQDAMSIDKKKPGRPSMTSTKMGICSQTKASLNKLGVQRRHRTEDELSSQAKAGLRMLFALDEQRVAQAFTSSFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVLLRNIRGECWTVNCVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAKCEMQALPRTFSDNLRTKLPDCVTLKGPSGAIWSIGLTTRDDTLYFTHGWQQFVKDHCLEENDLLVFKYNNESQFEVLIFDREGFCEKAGSYFVRKCEHTNKRNRDDCREEVNIPNGRADCASPEKFKQGDSIRVPAVVPSETSSKETFNAGAEFVSPVSVAVPTRRVKARGSKSNARGGVNWIIDAETPSAGKSKTNDTVYTSNRRPVTEEEKNITLQLAQEACTSDGFFIVMRPTHVYKRFYASIPSKWITEHLSPYSEDVILRVGEREWPAKFSFEHGRRTGGLTGGWKHFALDNNLEEFDVCVIRLADKTIKPMVMEVQIFRVVEEVTALSGGKQGRKAIQA 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0286 918 SUPERFAMILY DNA-binding pseudobarrel domain 253 354 IPR015300 -
Sto5g0286 918 CDD B3_DNA 258 352 IPR003340 GO:0003677
Sto5g0286 918 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 419 575 IPR044837 -
Sto5g0286 918 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 576 905 IPR044837 -
Sto5g0286 918 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 366 IPR044837 -
Sto5g0286 918 SUPERFAMILY DNA-binding pseudobarrel domain 22 113 IPR015300 -
Sto5g0286 918 Pfam B3 DNA binding domain 802 894 IPR003340 GO:0003677
Sto5g0286 918 Pfam B3 DNA binding domain 264 352 IPR003340 GO:0003677
Sto5g0286 918 Pfam B3 DNA binding domain 488 573 IPR003340 GO:0003677
Sto5g0286 918 Pfam B3 DNA binding domain 577 654 IPR003340 GO:0003677
Sto5g0286 918 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Sto5g0286 918 Gene3D - 473 576 IPR015300 -
Sto5g0286 918 Gene3D - 780 903 IPR015300 -
Sto5g0286 918 Gene3D - 243 355 IPR015300 -
Sto5g0286 918 CDD B3_DNA 571 653 IPR003340 GO:0003677
Sto5g0286 918 SUPERFAMILY DNA-binding pseudobarrel domain 802 889 IPR015300 -
Sto5g0286 918 CDD B3_DNA 802 898 IPR003340 GO:0003677
Sto5g0286 918 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 419 575 - -
Sto5g0286 918 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 576 905 - -
Sto5g0286 918 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 10 366 - -
Sto5g0286 918 CDD B3_DNA 22 106 IPR003340 GO:0003677
Sto5g0286 918 Gene3D - 9 110 IPR015300 -
Sto5g0286 918 Gene3D - 577 658 IPR015300 -
Sto5g0286 918 SUPERFAMILY DNA-binding pseudobarrel domain 577 655 IPR015300 -
Sto5g0286 918 CDD B3_DNA 486 571 IPR003340 GO:0003677
Sto5g0286 918 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Sto5g0286 918 ProSiteProfiles B3 DNA-binding domain profile. 260 356 IPR003340 GO:0003677
Sto5g0286 918 SUPERFAMILY DNA-binding pseudobarrel domain 483 575 IPR015300 -
Sto5g0286 918 ProSiteProfiles B3 DNA-binding domain profile. 802 900 IPR003340 GO:0003677
Sto5g0286 918 SMART B3_2 583 655 IPR003340 GO:0003677
Sto5g0286 918 SMART B3_2 260 356 IPR003340 GO:0003677
Sto5g0286 918 SMART B3_2 17 108 IPR003340 GO:0003677
Sto5g0286 918 SMART B3_2 802 900 IPR003340 GO:0003677
Sto5g0286 918 SMART B3_2 488 582 IPR003340 GO:0003677
Sto5g0286 918 ProSiteProfiles B3 DNA-binding domain profile. 562 655 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0286 Sto-Chr5 1695808 1704843 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto5g0286 B3 5e-11 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0286 5 1695808 1704843 Sto5g0286 5 1695808 1704843 ECH