LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0221	ATGCCATTCAGAGATATTGTTCGTGAGCTGAGGGAAATTCGAGATGGCATGGGTAACATGTCTAGAAGAGCGGTGGAGGCCAAGCGTATTCATTGCCGTGGAAAATCTCACATTGCACCTGAATTGTCCTTACCACCATCGTCATCGTCAACTTCGTTGGTCACTCACCAGAGTCGCTGGGCTAACTTACCATCTGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCTCGGAGAGCGGTTGTAGCTTGTGCCTCTGTTTGTAAGTCTTGGAGGAAGATAACGGAGGAGGTGGTCAAGACACCTGAACAGTCTGGGTGGCTTACCTTTCCCATATCACTGAAGCAGCCTGGTCCCAGAGAGACTCCAATCCAGTGttttattaagagagaaaggaCCACTTCGACATATCATTTATATCTTGGTTTGAGCCCTGCTCTCTCTGGGGATATGAGTAAACTGCTATTGGCTGCAAAGAAGATTAGAAGGGCAACATGCACAGAATTTTTAATATCCTTGGTCGCAGATGATTTCTCTAAAGCAAGCAATACTTACGTTGGAAAGCTCAGGTCTAATTTTTTGGGCACCAAGTTCACGATCTTGGATAGTCAACCCCCACATGATTCTTCCCCTCCATTAAATAGCAAATTGCAACAAAGGATCCGTTCGAAGCAGGTACTTCCAAAGTCTACTGTTGTGAACTATAGTGTGGCCACAATTTCTTATGAGCTTAATGTTCTTCGCACGAGAGGTCCAAGGAGAATGCGTTGTATGATGCATTCAATTCCTGTATCTTCCATCCAAGAAGGGAGCACTGCTCCTACTCCTATAAAGTTTACTAATTGCCTGGATGAGCATTTATCTACCACACCCATTTCAAAAACAAGAAAGCCAGAAGTTGAGCATGGATCCAGTGGCATGGACAAGCCCCCAGAATCGAACCACAGTGCAAGTGAACcacttattttgaaaaataaagctCCTAGATGGCATGAACAGCTGCAATGTTGGTGCTTGAATTTCAAAGGACGTGTTACGGTGGCCTCAGTGAAGAACTTCCAGCTCGTAGCAACTGCAGAACCTCACCAAAATGTTTCAGTCGCAGAGCAAGATAGAGTGATACTTCAATTTGGGAAGATTGGAAAGGATATATTCACTATGGATTACCGCTATCCCCTCTCTGCATTTCAAGCCTTTGCAATTTGCTTGAGTAGCTTTGACACTAAACCTGCGTGCGAGTGA	1263	0.4378	MPFRDIVRELREIRDGMGNMSRRAVEAKRIHCRGKSHIAPELSLPPSSSSTSLVTHQSRWANLPSELLLDIIQRVEASETSWPARRAVVACASVCKSWRKITEEVVKTPEQSGWLTFPISLKQPGPRETPIQCFIKRERTTSTYHLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSKASNTYVGKLRSNFLGTKFTILDSQPPHDSSPPLNSKLQQRIRSKQVLPKSTVVNYSVATISYELNVLRTRGPRRMRCMMHSIPVSSIQEGSTAPTPIKFTNCLDEHLSTTPISKTRKPEVEHGSSGMDKPPESNHSASEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVATAEPHQNVSVAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0221	420	ProSitePatterns	Tub family signature 2.	405	420	IPR018066	-
	Sto5g0221	420	Gene3D	-	54	108	-	-
	Sto5g0221	420	Pfam	Tub family	121	415	IPR000007	-
	Sto5g0221	420	Gene3D	Tubby Protein; Chain A	118	420	IPR025659	-
	Sto5g0221	420	MobiDBLite	consensus disorder prediction	297	315	-	-
	Sto5g0221	420	SUPERFAMILY	F-box domain	57	123	IPR036047	GO:0005515
	Sto5g0221	420	PRINTS	Tubby superfamily signature	176	192	IPR000007	-
	Sto5g0221	420	PRINTS	Tubby superfamily signature	192	216	IPR000007	-
	Sto5g0221	420	PRINTS	Tubby superfamily signature	241	268	IPR000007	-
	Sto5g0221	420	PRINTS	Tubby superfamily signature	330	347	IPR000007	-
	Sto5g0221	420	PRINTS	Tubby superfamily signature	348	364	IPR000007	-
	Sto5g0221	420	PRINTS	Tubby superfamily signature	377	396	IPR000007	-
	Sto5g0221	420	PRINTS	Tubby superfamily signature	398	420	IPR000007	-
	Sto5g0221	420	MobiDBLite	consensus disorder prediction	295	325	-	-
	Sto5g0221	420	Pfam	F-box domain	60	105	IPR001810	GO:0005515
	Sto5g0221	420	SUPERFAMILY	Tubby C-terminal domain-like	109	420	IPR025659	-
	Sto5g0221	420	ProSitePatterns	Tub family signature 1.	348	361	IPR018066	-
	Sto5g0221	420	PANTHER	TUBBY-RELATED	1	420	-	-
	Sto5g0221	420	PANTHER	TUBBY-LIKE F-BOX PROTEIN	1	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0221	Sto-Chr5	1304313	1306397	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Sto5g0221		Tub	2.2e-107	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0221	5	1304313	1306397	Sto5g0221	5	1304313	1306397	ECH