Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0175 ATGGCAGGATTCTTCTCTCTAGGCCCACAGAACAAAGAAGAAGATCAAGAGAACAACAACAGTAACAGCCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAAGGATTCGAGATATGGCCACAGTCGTCGTCTTATCAACATCACAACTACTTGTCATTTGGGGCGGGTCCTAGTCGCAGAAACTCCTCCAACGACGACGTGGCATCGGACGACTCTACCAGATTTGGATTCACAGTGATGAGGTCTGGAGGTGGCATCAACTGTCAGGACTGTGGGAACCAAGCTAAGAAAGACTGTGCACATCTTCGATGCAGGACCTGCTGTAAGAGTCGAGGCTTTCACTGCCAAACACACGTTAAGAGCACTTGGGTTCCCGCAGCCAAACGCCGTGAACGACACCAACAACTCGCTGCCTTGCACCACCAACAACACCACGACCACCAATTTAGACCTGACAACTCTAAACGACACCGAGAAAATCAACCCTCCACTTCATTCATGCCAGTTCCTACAACAGGGTTGGAAGTGGGACAATTCCCAGCGGAGGTGAACTCTTCAGCTGTGTTTCGATGCGTGAGAGTAAGCGCAATGGACAGTCCAGATGAGCAGTACGCGTATCAAACGGCTGTGAACATCGGAGGCCACGTGTTCAAGGGAATTCTCTATGACCAAGGCCCAGAAAGTAGTTACACCACAGGCGGTGGTGACACCTCCTCCGGTGGAGCTGAAGCCCAACAACTGAATCTCATAactaccaccaccgccaccaccacgGCCAACCCAATATTTGACCCTTCTTCACTCTATCCGGCTCCGCTCAATGCCTTCATGGCTGTATTCAGTAATCTGTCTTTCTGGTTGGTGCTGAACTCGAAGCCGCTTTTTCCCGTTTATCCGTTTGCTTGCCGGATCAAAATGGAAGGAAATAGGTTTCGTGTTTCCTTAGGAAATGCTAGCTAG 963 0.4829 MAGFFSLGPQNKEEDQENNNSNSLFLFRNEEIYNKGFEIWPQSSSYQHHNYLSFGAGPSRRNSSNDDVASDDSTRFGFTVMRSGGGINCQDCGNQAKKDCAHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERHQQLAALHHQQHHDHQFRPDNSKRHRENQPSTSFMPVPTTGLEVGQFPAEVNSSAVFRCVRVSAMDSPDEQYAYQTAVNIGGHVFKGILYDQGPESSYTTGGGDTSSGGAEAQQLNLITTTTATTTANPIFDPSSLYPAPLNAFMAVFSNLSFWLVLNSKPLFPVYPFACRIKMEGNRFRVSLGNAS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0175 320 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 88 130 IPR006510 -
Sto5g0175 320 MobiDBLite consensus disorder prediction 1 20 - -
Sto5g0175 320 Pfam Domain of unknown function (DUF702) 86 228 - -
Sto5g0175 320 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 280 - -
Sto5g0175 320 MobiDBLite consensus disorder prediction 143 160 - -
Sto5g0175 320 MobiDBLite consensus disorder prediction 143 170 - -
Sto5g0175 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 280 IPR007818 GO:0003700|GO:0006355
Sto5g0175 320 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 179 227 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0175 Sto-Chr5 1037615 1039630 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto5g0175 DUF702 2.2e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0175 5 1037615 1039630 Sto9g3668 9 35126485 35129316 CCT
Sto5g0175 5 1037615 1039630 Sto2g0784 2 6705915 6706689 ECH
Sto5g0175 5 1037615 1039630 Sto5g0175 5 1037615 1039630 ECH