Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0156 ATGGCTTTCGTGGAAGACAAGATTAAAACCGGAGGACCTCAATCTCTAGTTGCCGAGATGAAGATGTTGAAAGAAATGCAGGATCAATCTGGGAGTCGAAAGACTATAAATTCCGAGTTATGGCATGCTTGCGCAGGCCCACTAGTAAGCTTGCCTCAGGTGGGGGGTCTCGTGTATTACTTCCCTCAGGGCCATAGCGAACAGGTGGCAGCTTCCACAAGAAGAACAGCGACCTCCCAGATTCCCAACTATCCAAATCTTCAATCTCAGTTACTTTGCCAAGTTCAGAATGTCGCACTTCATGCAGACAAAGATACAGATGAAATCTATGCCCAAATGAGTCTCCAACCGTTGAATTCTGAAAAAGATGTGTTCCCTATATCTGATTTTGGGCTAAAGGGCAGTAAACATCCAACTGAGTTTTTCTGCAAAACCTTGACTGCTAGTGATACAAGCACGCACGGTGGCTTTTCAGTACCTCGCAGGGCTGCAGAAAAGCTCTTTCCTCCCTTAGATTACACCATTCAACCCCCAACTCAAGAGCTCGTTGTCCGAGACTTGCATGATAATACCTGGACATTCCGACATATATACCGTGGTCAGCCGAAGAGACATCTTCTCACAACCGGATGGAGTTTGTTTGTGGGCTCAAAAAGGCTTAAAGCAGGTGACGCCGTTCTTTTTATCAGGGACGAAAAATCGCAGTTGCTAGTTGGTGTTAGGCGTGCTAATCGTCAACAGACAACATTGCCATCATCTGTGCTTTCTGCTGATAGCATGCATATTGGAGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCACAGCCCATTCACTATTTTCTACAACCCAAGGGCATGCCCTTCCGAATTTGTTATTCCGCTCGCTAAATACAGACAATCTGTTTATGGCACCCAACTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACTGAGGAATCTGGTAAGCGCAGATATATGGGCACAATTGTTGGCATCAGCGACTTGGATCCTTTGAGGTGGCCTGCTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGCGACAAGCAGAACAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTGAAGCGACCATTGCCATCTGGAACTGCCGAAAATGAGTGGGGCACTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGGAAATGTGGACCTCCCAAGCTCTATATCAAATCTATACTTGGAACAGATGATGAAATTTCTTTATAAACCTCAACTTGTTAACAATCCTGGAGCATTTTCATCAGTCATGCAGCAAGAATCTGCTACAAAGACCGATTCCTTTCAAGAGGTGAAGACCTCACTCACTACTGATAACCAAAAAGTTCGTCTTGCATGTTCAGAAGGCTTACCACCAAAAAGTCTAGATCATTCTCAATATTTCCCTGACCAACCTAATGCCTTAAACTTGCATCCCCTGTTGAAAAGTGATCAAACTGGAAAATTGCATCCTCTGACCAAAATTGATAATGCTCAGTCCTCCAGTACAGTTATTGATAAGACAAAATTAGAATCTGTGGATTTAACTGACCATATTGTTGATTTCTCTTCCATAGAAGGTTCCAACATGGAAAAAGTGGTTGCTAACCCAGTGAACCCACTAGGCCTTGCGAGCCAGTTAACATTCCCTAATCAAAACCTTAGTCCATGGCCCATGCAGCCTCAGTTAGAATCACAACTATGCCATTCTCAACTGGTTGATATTGCTCAATCTGATTACACTATGTTAAATGGCCTACTTCCTCAGCTAGATGTTGATGAATGGATGATGTATTCTTCCCAACCTTTTGCCGGAATAAGTAGATCAGTTGGGCCTTTATCAGGTTTGCAAGAACAGTCTACACTTGTCCCTCACGCAGCTAATGCCCCTTTACCCTCTATGAGCCAAGAAATGTGGGATCATTATCTCAAGAATTTGAAGTTACCTCAAGCTGACCAGCTAACGCCCATCTCTCAACAAGGGCTACATAGTCTTAATTGTATATCTAGTTCAAACAATTTGAGGGATCTGTCAGCTGAGAGCAATAATCAAAGTGCAGTGTACAGTAATGTCAATGTTGACGCTAGTAACAGTGCTAGTACTATGGTTGATCCTTCTACTTCAAGTACCATTTTGGATGAGTTTTGCACGTTGAAGGATGGGGATTTTCAGAATCCATCAGATTGCATGGTAGGCAACTTGAGTTCAAGCCAGGATGTCCAATCTCAAATAACCTCAGCTAGCCTGGCCGAGTCGCATGTTTTTCCTCTGCAAGACATCCCAGACAACTCGGGTGGCACATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCAACAAGTTGCTGCACCCATGCGGACCTACACCAAGGTTCAAAAGGCAGGATCAGTAGGAAGATCAATTGATGTAACTACATTTAAGAACTACGAGGAACTTATCTCTGCAATTGAATGCATGTTTGGACTTGAGGGTCTTCTGAATGACACTAGAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAGAACGATGTTCTACTTGTTGGGGATGATCCATGGGAGGAATTCGTGGGGTGTGTGCGTTGCATCAGAATTTTATCTCCTTTGGAAGTTCAACAGATGAGCGAGGAGGGAATGAAGCTTCTAAACAGTGCTGCGGTGCAACAGATGAATACTGGTTCCATGTCGGGTGGCTTCATATAG 2805 0.4381 MAFVEDKIKTGGPQSLVAEMKMLKEMQDQSGSRKTINSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVALHADKDTDEIYAQMSLQPLNSEKDVFPISDFGLKGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANHSPFTIFYNPRACPSEFVIPLAKYRQSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPASKWRNIQVEWDEPGCGDKQNRVSAWEIETPESLFIFPSLTSSLKRPLPSGTAENEWGTLLRRPFIQVPENGNVDLPSSISNLYLEQMMKFLYKPQLVNNPGAFSSVMQQESATKTDSFQEVKTSLTTDNQKVRLACSEGLPPKSLDHSQYFPDQPNALNLHPLLKSDQTGKLHPLTKIDNAQSSSTVIDKTKLESVDLTDHIVDFSSIEGSNMEKVVANPVNPLGLASQLTFPNQNLSPWPMQPQLESQLCHSQLVDIAQSDYTMLNGLLPQLDVDEWMMYSSQPFAGISRSVGPLSGLQEQSTLVPHAANAPLPSMSQEMWDHYLKNLKLPQADQLTPISQQGLHSLNCISSSNNLRDLSAESNNQSAVYSNVNVDASNSASTMVDPSTSSTILDEFCTLKDGDFQNPSDCMVGNLSSSQDVQSQITSASLAESHVFPLQDIPDNSGGTSSSHVDFDESSFLQNNSWQQVAAPMRTYTKVQKAGSVGRSIDVTTFKNYEELISAIECMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPLEVQQMSEEGMKLLNSAAVQQMNTGSMSGGFI 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0156 934 CDD B3_DNA 141 242 IPR003340 GO:0003677
Sto5g0156 934 Gene3D - 139 243 IPR015300 -
Sto5g0156 934 PANTHER AUXIN RESPONSE FACTOR 5 23 924 - -
Sto5g0156 934 SMART B3_2 142 244 IPR003340 GO:0003677
Sto5g0156 934 SUPERFAMILY DNA-binding pseudobarrel domain 132 271 IPR015300 -
Sto5g0156 934 SUPERFAMILY CAD & PB1 domains 821 899 - -
Sto5g0156 934 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Sto5g0156 934 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Sto5g0156 934 ProSiteProfiles PB1 domain profile. 820 904 IPR000270 GO:0005515
Sto5g0156 934 Gene3D - 306 378 - -
Sto5g0156 934 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 924 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto5g0156 934 Gene3D - 816 909 - -
Sto5g0156 934 Pfam AUX/IAA family 816 903 IPR033389 -
Sto5g0156 934 Pfam Auxin response factor 268 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0156 Sto-Chr5 901727 906057 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto5g0156 AUX_IAA 3.4e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0156 5 901727 906057 Sto5g0156 5 901727 906057 ECH