Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0035 ATGTCTACGCAAAAGATGGTATCTGCAAAGCCCACGGCCACTAAGAACCCTAAAAATGTGTACCACATTGGAGGCCTCCAAGTGGAATTTCCTTACCAACCATACGGTTCTCAGTTTGCGTTTATGGGTAGAGTCATCTCCACCCTTAACCAAGCTCAGAGAGAAGGCCATTGTCATGCATTGCTTGAGTCTCCAACTGGTACTGGCAAATCCCTTTCCCTTCTCTGTTCCTCTCTCGCTTGGCAGCACAACTATAAATTGAATCAACACCATACCAATCTCAAGCCCGCTCCAGAGGCAACCACCCACCCTCTTCTCTACGGCGGCGGATTTGTTCCCGACGACCTTTCTCCACCATCACAAAATGTGCAGCTCCCAGAGTCTGAGGCTACCTCCATGAAGCAGAAGAAAAAGGCTGTACCTACTATATATTATGCCTCGAGGACACATTCGCAAATTTCTCAAGTAATTCGGGAACTGCGGAAAACTGCTTACAGGGTGCCGATGGCTGTGCTGGCATCACGGAAGCATTACTGCACTAATAAACATATACTAGCCAAAGAGAATATTGATGAAGAATGTAAACTACTTTTGAAAGATCAGGCAACAGGATGTCCAGAATTCAAAAGTGCTAATAAAGTCAAAGGACATCCATCCCTTCAAAGAGGAGGATGTAATGAGGTGCATGATATAGAAGATCTTGTGAAGGTCGGACAAGCGGTGAAAGGTTGCTCTTATTATGCAGCTCGTTCCATGTCAGATGATGCACAATTGGTATTTTGTCCTTATAACTATATTATCAATCCAGTCATTCGGGCAGCAATGGATGTGAATATTAAAGGAGCTGTTGTGATTCTTGATGAAGCTCACAATATAGAGGACATCACTCGTGATGCTGGTAGTGTTGATATCGGAGAGGATGTATTGGATAAGCTGCAAACGGAGCTCCAGCAACTTTGTTCTGTCAATGCTCTGATATACCAACCTTTGTATGAAATGGCGCAGGGTCTAACAAGTTGGATAGATCGGAGGAAAAATAATCTAGAAAAGCGTGATTTTCAGCACTATGTGTCTTGTTGGACTGGGGAAAAGGCCTTAAGAGAGCTCGAAGAAGCGAATATTTCACTACAGTGCTTCCCTATATTGATAGAGTGTGCTACCAAGGCAATCAGAATTGCTACAGATTTGGAGGTGGATGTACCACATTTAAGTGGCATGTCAGTGATAACACTAGAAGGCTTATTCTCTTCACTAACTTATTTCTTCTCGAAAAATGGATCTCACATGCTGGATTACCAGCTTGCTCTACAGCGAAATGTTAAGAAGGATGCTGGAACTTTTGGAAATTGGACCCACACTATAAGCTTGTGGTGCTTGAATCCTGCAGTTGTGTTTAGTGACATTGCTAATCTTTCCTTGTCGGTCATTTTGACTTCGGGGACACTGTCACCGATGAATTCTTTTTCATCTGAGCTAGGAGTTCAGTTTGAAACTAGTCTGGAAGCTCCTCATGTAATTGATGTTGATTCACAGGTCTGGCCTGCTATAATCTGTACTGGTCAAGGTAATTATCCTTTGAATGCAAGTTATAAAACAGCAGATGGATATACATTCCAGGATGCAGTCGGAAGATCCTTAGAGGAAATCTTCAAGATTGTTCCAGGTGGCTGTCTTGTGTTCTTTCCAAGTTATAAATTGATGGAGAAATTATGCAGTCGTTGGTCTGAAACGGGTCAATGGTCTCGACTTAATGCAGAAAAAACACTTTTTGTTGAACCAAGAGGAGGAAACCAAGATGATTTTGAACTCACTCTAAAAGGGTATTACAACTCAATTCATCTTGGAAACAGACCTACATTGGGCAAGAAAAGAAGGATAAAAAAGATTGGTTTTAATAGCTTCCATACATTTGATTCCTCGAAAAATTCCAAGAAAGGAGGAGGCGCTTTATTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTTTCTGATGATAATGCTAGAGTTGTTATTATTGTTGGCATTCCATTTCCCAATATAAATGATATTCAAGTTGCACTAAAGAAGAAATATAATGACACATACAAACCATCCAAAAATCTTTTAAGTGGAAGTGAGTGGTACTGCCACCAAGCATTTCGAGCTCTAAATCAAGCAGCAGGTCGTTGTATACGGCATAGGCTTGATTATGGAGCAGTCATCCTATTGGATGAACGGTTTCGGGAAGAAAGAAATAGAGCATTCATTTCAAAGTGGCTAAGAAAATCCTTAAGGGTATATGACAGTTTTGACTTGTCTTTGGAGGGACTGAAATCATTCTTTGAGGATGCCAAGGAGCAGTTTGGCATGAATGCCACTCAGACTTTGGGCTTAGACCAGGATTGTGTTCAATCCAAGGATCAAAATAAGGGTTTTACAAGAAAGACAAATCAGAAGCTGATCAATTCTGATAATAGTGGTGAGAAAGAAATAGTAATGATCAAGGATGATGGCTCTTTCCCCATACTGAGATATCAAGATCTTCTTGAGAGTCAGCCATCAATGCCAAAGGATAATAACTCATACAATTGTAAAGAATATTTTGACCCCGAAGGCTGCATTCAGGCAGAATCAAATTCAAGCTTCACTGGGGCATTATCTGTGGCAGTCACACATGAAGAAACCTCCTTTGTCAAGGAAACCCTTTGTAAAAATGGCACCAGTGACCCTGCTAGCCCTGGTTACTGTTCTAAAGATAATTACTGTAGTTCCACAATAATTGAGGCCTCTCCCAAACTAGGTCATGGTGATCAGTTATCAattcttccattttctttaaCTAATGGAAGTAAAGCTTCTTCAACAGCTCAGTCTTCAATATCAGTTACTCCCCAAAAAGATGTAATTGCAAACAGCTTCCATGTTCTGGAAGTAGAATCATCTTTAAATAGGAGTGTTAATTCTCATACACAGAAAAGGAGAAAGTCCAGGGACATACCATTTATAAGCCTTATTGAGGAAGAAAATTATATTGCACCCTGTGCCACCATTCCTTCTAGGCACACTGTAAGCTCAGCGATTGTTAAAGAGGAAACTAACGGAAACGAATtgggttttcacaaaaattcgaaGTCAAATTCGCCTATTCCTCTCATGAAGAAGTTACAGATATTTTGCTCACTTTGTAAAACCCCTTTGGGTCGACCTGAGAACCATCTATATATAACATGCTCATTGACTTCATCATCAAAAGTTCACTTAAGGTCTCTTTTAAAACAGAGACTAAAAGCTTACCCTGATGATACTTTAAGTGTACCAGTTATAATTACTGGAACTTCATTTGTGGATCACCGTATCTGCAACAGAATTAATGGAAGTTCTCCAGAGCAGGGTATTTGGTGCCAAGAAGACGGATGTGTCTTTAGGACTATTTGCTGTCCCTTCTGTTGTAACACTGACAATTTGCTTGGAGTACAGATAATGGCAACTAATGCATCTAATAgtcaattgcttgacaagATATTGTTTTACTTTGATTTTTTGGAAGTTAAGGACCCTGAGGAGTCAATGAACGAGACTTCAGATGAAGTGGTCTTGTTGGCAGTCAGTGGATCTGGCACGGATAAAAGTGCAGTCTTGAATTCGATTGACAAATTTTCTTATGTTCCCCAACTGGAGAAGTCAATAGTCTTGAAGACTAGGAAATCAAAGAGACTACCAACAACAGGCGTTTCTTCTAATGCAGAAAGCCAAAGTTGA 3744 0.3998 MSTQKMVSAKPTATKNPKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLNQAQREGHCHALLESPTGTGKSLSLLCSSLAWQHNYKLNQHHTNLKPAPEATTHPLLYGGGFVPDDLSPPSQNVQLPESEATSMKQKKKAVPTIYYASRTHSQISQVIRELRKTAYRVPMAVLASRKHYCTNKHILAKENIDEECKLLLKDQATGCPEFKSANKVKGHPSLQRGGCNEVHDIEDLVKVGQAVKGCSYYAARSMSDDAQLVFCPYNYIINPVIRAAMDVNIKGAVVILDEAHNIEDITRDAGSVDIGEDVLDKLQTELQQLCSVNALIYQPLYEMAQGLTSWIDRRKNNLEKRDFQHYVSCWTGEKALRELEEANISLQCFPILIECATKAIRIATDLEVDVPHLSGMSVITLEGLFSSLTYFFSKNGSHMLDYQLALQRNVKKDAGTFGNWTHTISLWCLNPAVVFSDIANLSLSVILTSGTLSPMNSFSSELGVQFETSLEAPHVIDVDSQVWPAIICTGQGNYPLNASYKTADGYTFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCSRWSETGQWSRLNAEKTLFVEPRGGNQDDFELTLKGYYNSIHLGNRPTLGKKRRIKKIGFNSFHTFDSSKNSKKGGGALFGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKYNDTYKPSKNLLSGSEWYCHQAFRALNQAAGRCIRHRLDYGAVILLDERFREERNRAFISKWLRKSLRVYDSFDLSLEGLKSFFEDAKEQFGMNATQTLGLDQDCVQSKDQNKGFTRKTNQKLINSDNSGEKEIVMIKDDGSFPILRYQDLLESQPSMPKDNNSYNCKEYFDPEGCIQAESNSSFTGALSVAVTHEETSFVKETLCKNGTSDPASPGYCSKDNYCSSTIIEASPKLGHGDQLSILPFSLTNGSKASSTAQSSISVTPQKDVIANSFHVLEVESSLNRSVNSHTQKRRKSRDIPFISLIEEENYIAPCATIPSRHTVSSAIVKEETNGNELGFHKNSKSNSPIPLMKKLQIFCSLCKTPLGRPENHLYITCSLTSSSKVHLRSLLKQRLKAYPDDTLSVPVIITGTSFVDHRICNRINGSSPEQGIWCQEDGCVFRTICCPFCCNTDNLLGVQIMATNASNSQLLDKILFYFDFLEVKDPEESMNETSDEVVLLAVSGSGTDKSAVLNSIDKFSYVPQLEKSIVLKTRKSKRLPTTGVSSNAESQS 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0035 1247 Pfam DEAD_2 145 307 IPR010614 GO:0003677|GO:0003678|GO:0005524
Sto5g0035 1247 Gene3D - 34 339 IPR027417 -
Sto5g0035 1247 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 282 291 IPR002464 -
Sto5g0035 1247 SMART deadxpd 26 351 IPR006554 GO:0003678|GO:0016818
Sto5g0035 1247 SMART Cxpdneu3 564 744 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Sto5g0035 1247 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 15 1100 IPR045028 -
Sto5g0035 1247 Pfam Helicase C-terminal domain 546 757 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Sto5g0035 1247 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 24 359 IPR014013 GO:0005524
Sto5g0035 1247 CDD SF2_C_XPD 510 742 - -
Sto5g0035 1247 Gene3D - 523 768 IPR027417 -
Sto5g0035 1247 PANTHER FANCONI ANEMIA GROUP J PROTEIN 15 1100 - -
Sto5g0035 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 738 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0035 Sto-Chr5 216651 227838 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0035 5 216651 227838 Sto5g0035 5 216651 227838 ECH