Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2712 ATGATACGGTTCTATGGCGATATTTGTGGTGACCTAAAAAGTGCCCATCTTCTGTTCGATGAAATTCCTGAACCAAGTTTAATTTCTTGGACAAGTTTGATCTCCTCTTACGTCCATCACGGGCAGCATGTAATGGGTCTGCATTTGTTTTCTCTTTTATGTCAATCTGGATTGCATCCAAATGAGTTTGGTTTCTCTGTGGCACTCAAGGCATGCAGAGTGATGCAACATCCTATCATGGGGAGACTCATCCATGGCTTAATAATTAAAACTGGGTTTGAGTCACATAGCTTTTGTAATGCTTCCATTGTTCATATGTATGCTGAATGTGGAGATATTGAGAATTCAAGGAAGCTATTTGATGGGATTGCTTTGGGAGAAAGGTCTGAGGCCATATGGAATACTGTGCTAAATGCTTATGCGCAGATGTCTGATGCAGAGGGTACCCTGCACTTGTTTCATAAGATGATGCACTCTGCAATACCGCCAAACTGTTTTACTTACACAATCCTTGTTAAACTCTGTGCTGATGTGCTTGATTTTGACCTTGTAAGGTGTATTCATGGCCAAACTGTTCAGATAGGGATTGAGAATGATGTGGTGGTTGGTGGAGCTCTTGTTGACACCTATTCAAAACTGGGATTTTTAGATGATGCTTGTAAGGTGTTTCAAGTTCTTGAGGAAAAGGACAATGTGGCATTATGTGCATTATTGGCTGGGTTCAATCAGATTGGACAAGGTGGAGAAGGCCTTGCATTTTATGTTGATTTTCTTTATGAAGGTAATAAACCAGACCCATATACTTGTGCAAGTATTGTTAGTTTGTGTTCAAATTTTATGACACATCTTGTTGGCACCCAAGTTCACTGTAGTTTCATCAAACTTGGTTTTATGATGGACTCGTATCTTGGCAGTGCCTTTATCAATATGTATGGAACGTTTGGAATGATTTCCGATGCTTGTAAATGTTTCCTTGaggttttttataaaaatgaaatcTGCATAAGTGCCATGATCAATACTTTAGTTCTGAATTCTAATGACGAAAAGGCTCTAGATCTGTTTTGTTGGATGAGGGAAGTTTGTGTTGTACCTAGCAAATCTACGATCAGCTATGTTCTACGAGCTTGTGGGAACCTTTATATGCTTAAAGAAGGAAGGTCTTTGCATTCTTGCATTATTAAAAGCCCTTGTGAAGGTGACTCTAAGTTAGGCTTGGAAAATGCTCTTCTTGAGATGTATTCTAGATGTGGAGCTATTAATGATGCAAAAGTGGCTTTTTATGAGATGAAACTGCAGAATGAGTTTTCCTGGACTACTCTCATATCAGGATGCAGTGAATCAGGGCAATTTGCAGAAGCTTTTAGGCTCTTCCGTAATATGCTTTTTCATTCAATATCTTCAAAACCTAGTCAATTTACTTTGGTCAGTGTTATTCAGGCTTGTGCAGTAACAGAGTCACTCAATTTTGGAAAACAAGTCCATTCCTATATCATAAAAGCAGGATTCGAATATCATCCCTTCATTGGAAGCGCCCTGATTAACATGTATGCAGCATTTAAACATGAAATGTTGAATGCTTTTCAGGTATTCTTGTCCATGAAAATTCAAGATCTTATCTCTTGGAGCATCATGTTAACTTCCTGGGTCCAAAACGGTTATCATGAAGAAGCTCTTAAGCTTTTTGCAAAATTCCAGAGTTTTCCATCTTTTCAGGTTGATGAGTCTATATTATCCAGCTGCCTCTCAGCTGCTGCTGGCTTAGCAGCACCAGAAATAGGAAAATGTTTCCATTCCTGGGTTATCAGACTTGGCTTTAAAAACGATCTTCGGGTGGCTTCATCCATCATAGACATGTATAGTAAATGTGGAAATATTAAAGATGCACGTAGGTTTTTCAATTCTATCAGGGACCACAACGTAGTATCTTGGACAGCTATGATATATGGATATGCTTATCATGGGCTTGGGAAAGAAGCTATTGACCTGTTTAATGAGGCTAAAGAAGGTGGGTTGGAACCTGATGGCGTCACATTCTCTGGGATTTTAACTGCGTGTAGCCATGCAGGACTTGTGCAGGAAGGTTGGGAACTTTTTGAGTACATGAGAAGTGAACACAAGTGTGAAGTAACAATGAATCATTATGCGTGCATGGTTGATCTTCTTGGTCGAGCAGCAAAATTGGAAGAAGCAGAGGCATTGATAAAGAaatccccatttgattcaaaatCTCTTCTATGGAAGACATTGCTGGGTGCTTGCTGTAAGCATGAGAATGCTGAATTAGGACTCCGAATATCAAAGATGCTTGCCGATATTGAACTGAATGAACCCTCAACCTATGTTCTACTATCTAACATTTATGCATCAGCTTCAATGTGGAAAAACTCCACTGAATTCAGAAACAAAATGGTGGAGTGGAATGTTAATAAACAACCTGGTAGTAGTTGGATTCAAGTGGCTGGTTAG 2469 0.3884 MIRFYGDICGDLKSAHLLFDEIPEPSLISWTSLISSYVHHGQHVMGLHLFSLLCQSGLHPNEFGFSVALKACRVMQHPIMGRLIHGLIIKTGFESHSFCNASIVHMYAECGDIENSRKLFDGIALGERSEAIWNTVLNAYAQMSDAEGTLHLFHKMMHSAIPPNCFTYTILVKLCADVLDFDLVRCIHGQTVQIGIENDVVVGGALVDTYSKLGFLDDACKVFQVLEEKDNVALCALLAGFNQIGQGGEGLAFYVDFLYEGNKPDPYTCASIVSLCSNFMTHLVGTQVHCSFIKLGFMMDSYLGSAFINMYGTFGMISDACKCFLEVFYKNEICISAMINTLVLNSNDEKALDLFCWMREVCVVPSKSTISYVLRACGNLYMLKEGRSLHSCIIKSPCEGDSKLGLENALLEMYSRCGAINDAKVAFYEMKLQNEFSWTTLISGCSESGQFAEAFRLFRNMLFHSISSKPSQFTLVSVIQACAVTESLNFGKQVHSYIIKAGFEYHPFIGSALINMYAAFKHEMLNAFQVFLSMKIQDLISWSIMLTSWVQNGYHEEALKLFAKFQSFPSFQVDESILSSCLSAAAGLAAPEIGKCFHSWVIRLGFKNDLRVASSIIDMYSKCGNIKDARRFFNSIRDHNVVSWTAMIYGYAYHGLGKEAIDLFNEAKEGGLEPDGVTFSGILTACSHAGLVQEGWELFEYMRSEHKCEVTMNHYACMVDLLGRAAKLEEAEALIKKSPFDSKSLLWKTLLGACCKHENAELGLRISKMLADIELNEPSTYVLLSNIYASASMWKNSTEFRNKMVEWNVNKQPGSSWIQVAG 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2712 822 TIGRFAM PPR: pentatricopeptide repeat domain 132 165 IPR002885 -
Sto4g2712 822 TIGRFAM PPR: pentatricopeptide repeat domain 436 466 IPR002885 -
Sto4g2712 822 TIGRFAM PPR: pentatricopeptide repeat domain 677 710 IPR002885 -
Sto4g2712 822 TIGRFAM PPR: pentatricopeptide repeat domain 28 62 IPR002885 -
Sto4g2712 822 TIGRFAM PPR: pentatricopeptide repeat domain 642 675 IPR002885 -
Sto4g2712 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Sto4g2712 822 Pfam PPR repeat family 434 483 IPR002885 -
Sto4g2712 822 Pfam PPR repeat family 640 687 IPR002885 -
Sto4g2712 822 Pfam PPR repeat family 131 176 IPR002885 -
Sto4g2712 822 Gene3D Tetratricopeptide repeat domain 570 821 IPR011990 GO:0005515
Sto4g2712 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Sto4g2712 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 705 IPR002885 -
Sto4g2712 822 Pfam E motif 757 819 IPR046848 -
Sto4g2712 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Sto4g2712 822 Gene3D Tetratricopeptide repeat domain 182 289 IPR011990 GO:0005515
Sto4g2712 822 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515
Sto4g2712 822 Gene3D Tetratricopeptide repeat domain 81 181 IPR011990 GO:0005515
Sto4g2712 822 Gene3D Tetratricopeptide repeat domain 403 497 IPR011990 GO:0005515
Sto4g2712 822 Gene3D Tetratricopeptide repeat domain 290 387 IPR011990 GO:0005515
Sto4g2712 822 PANTHER OS07G0578800 PROTEIN-RELATED 285 483 IPR045215 GO:0003723|GO:0009451
Sto4g2712 822 PANTHER OS07G0578800 PROTEIN-RELATED 490 819 IPR045215 GO:0003723|GO:0009451
Sto4g2712 822 PANTHER OS07G0578800 PROTEIN-RELATED 132 278 IPR045215 GO:0003723|GO:0009451
Sto4g2712 822 PANTHER OS07G0578800 PROTEIN-RELATED 236 388 IPR045215 GO:0003723|GO:0009451
Sto4g2712 822 PANTHER OS07G0578800 PROTEIN-RELATED 2 154 IPR045215 GO:0003723|GO:0009451
Sto4g2712 822 PANTHER OS07G0578800 PROTEIN-RELATED 389 563 IPR045215 GO:0003723|GO:0009451
Sto4g2712 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Sto4g2712 822 Pfam PPR repeat 205 229 IPR002885 -
Sto4g2712 822 Pfam PPR repeat 28 57 IPR002885 -
Sto4g2712 822 Pfam PPR repeat 540 565 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2712 Sto-Chr4 28180573 28183041 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2712 145 821 Glycoside Hydrolase AT3G49170 33.622 6.73e-115 367